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Added git init after copy_tree #110

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andrew-fennell
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Added git init to fix git issue, described in #109


I realize this is not an ideal fix, but I'm hoping to get a conversation started to this can finally be fixed.

@BurningEnlightenment
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Hi, first-off thanks for the contribution. However, as you noted this isn't the right way to go about it. Please see #17 for further information.

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