Data repository associated with this project.
This data repository contains:
template/template.nii.gz: ex-vivo template.template/mask_spinalcord.nii.gz: binary spinalcord mask.template/map_greymatter.nii.gz: probabilistic grey matter map.template/mask_spinalsegments.nii.gz: mask of spinal segments, the value corresponds to the cervical segment, e.g. voxel value of 5 corresponds to C5 spinal level.template/label_spinalsegments.nii.gz: point-wise spinal level labels.atlas/mask_motortracts.nii.gz: mask of spinal motor tracts, the value corresponds to a specific motor tract, see Labels sub-section for details. NOTE: will be upload by 06/09/2020.
The raw data are accessible at (internal server): duke:archives/projects/2020/template_exvivo_uqueensland
Motor tracts value in mask_motortracts.nii.gz:
- 01 - Anterior corticospinal tract
- 02 - Central canal
- 03 - Epaxial motor column
- 04 - Trapezius and sternomastoid motor neurons of lamina 9
- 05 - Hypaxial motor column
- 06 - Lateral corticospinal tract
- 07 - Lamina 2 of the spinal gray (substantia gelatinosa)
- 08 - Cuneate fasciculus
- 09 - Gracile fasciculus
- 10 - Phrenic motor neurons of lamina 9
- 11 - Biceps motor neurons of lamina 9
- 12 - Supraspinatus and infraspinatus motor neurons of lamina 9
- 13 - Deltoid motor neurons of lamina 9
- 14 - Triceps motor neurons of lamina 9
- 15 - Forearm extensor motor neurons of lamina 9
- 16 - Forearm flexor motor neurons of lamina 9
- 17 - Latissimus dorsi motor neurons of lamina 9
- 18 - Pectoral muscle motor neurons of lamina 9
Gros, C., Asiri, A., De Leener, B., Watson, C., Cowin, G., Ruitenberg, M., Kurniawan, N., Cohen-Adad, J., 2020. Ex vivo MRI template of the human cervical cord at 80μm isotropic resolution, in: Proceedings of the 28th Annual Meeting of ISMRM. Presented at the ISMRM.
Charley Gros, Nyoman Kurniawan, Benjamin De Leener, Charles Watson and Julien Cohen-Adad.