Add lumbar data and steps from future lumbar registration tutorial #17
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This was referenced Oct 9, 2023
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joshuacwnewton
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Oct 10, 2023
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| # Register the image to the template using segmentation and labels | ||
| # TODO: Uncomment when https://github.com/spinalcordtoolbox/PAM50/pull/27 gets merged and a new PAM50 release is made. | ||
| #sct_register_to_template -i t2_crop.nii.gz \ | ||
| # -s t2_crop_seg.nii.gz \ | ||
| # -ldisc t2_crop_label.nii.gz \ | ||
| # -c t2 -qc qc \ | ||
| # -param step=1,type=seg,algo=centermassrot:step=2,type=seg,algo=bsplinesyn,metric=MeanSquares,iter=3,slicewise=0:step=3,type=im,algo=syn,metric=CC,iter=3,slicewise=0 |
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Note: The actual registration step causes an error, because the PAM50 release used in SCT's master branch does not yet have the cauda equinea label (60), see:
So it has been commented out for now. (Thankfully, this command is not strictly necessary in order for this PR to be merged, since none of the generated files need to be packaged up.)
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