Update GHA workflow structure to match other repos (workflow-dispatch, NodeJS 12 actions, etc.)
#22
Workflow file for this run
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| name: Package SCT C++ binaries | |
| on: | |
| pull_request: | |
| workflow_dispatch: | |
| inputs: | |
| release_title: | |
| description: 'Release title (e.g. rYYYYMMDD)' | |
| required: true | |
| # all this does is collect three dependencies, | |
| # - spinalcordtoolbox-ants which essentially a more minimal fork of https://github.com/ANTsX/ANTs | |
| # - spinalcordtoolbox-dev, which comes from https://github.com/neuropoly/spinalcordtoolbox/blob/master/dev | |
| # - ctrDetect, from https://www.creatis.insa-lyon.fr/site7/en/ctrDetect | |
| # and squish them together in a single file. | |
| # while making sure they all have the prefix "isct_" on them. | |
| # TODO: include some checksums; the ctrDetect upstream doesn't even use TLS. | |
| jobs: | |
| build: | |
| strategy: | |
| matrix: | |
| os: [linux, osx, windows] | |
| runs-on: ubuntu-latest | |
| steps: | |
| # upstream: https://github.com/neuropoly/ANTs, which has had its build reduced to only output 4 programs. | |
| - name: get spinalcordtoolbox-ants | |
| run: | | |
| # TODO: this is currently at kousu/ANTs; get it moved to neuropoly/ANTs | |
| case "${{ matrix.os }}" in | |
| linux) | |
| URL="https://github.com/spinalcordtoolbox/build_ANTs/releases/download/r20220516-2/sct-apps_centos7.tar.gz" | |
| ;; | |
| osx) | |
| URL="https://github.com/spinalcordtoolbox/build_ANTs/releases/download/r20220516-2/sct-apps_macos-10.15.tar.gz" | |
| ;; | |
| windows) | |
| URL="https://github.com/spinalcordtoolbox/build_ANTs/releases/download/r20220516-2/sct-apps_windows-2019.tar.gz" | |
| ;; | |
| esac | |
| curl -L "$URL" -o spinalcordtoolbox-ants.tar.gz | |
| mkdir -p spinalcordtoolbox-ants && tar -zxvf spinalcordtoolbox-ants.tar.gz -C spinalcordtoolbox-ants | |
| mkdir -p pkg && cp -rp spinalcordtoolbox-ants/sct-apps/* pkg/ | |
| mkdir -p pkg/copyright | |
| mv pkg/COPYING.txt pkg/copyright/LICENSE_ANTs.txt | |
| # upstream: hhttps://github.com/biomedia-mira/stitching | |
| - name: get stitching | |
| run: | | |
| case "${{ matrix.os }}" in | |
| linux) | |
| URL="https://github.com/spinalcordtoolbox/build_biomedia_stitching/releases/download/r20221109/stitching_centos-7.tar.gz" | |
| ;; | |
| osx) | |
| URL="https://github.com/spinalcordtoolbox/build_biomedia_stitching/releases/download/r20221018/stitching_macos-10.15.tar.gz" | |
| ;; | |
| windows) | |
| URL="https://github.com/spinalcordtoolbox/build_biomedia_stitching/releases/download/r20221018/stitching_windows-2019.tar.gz" | |
| ;; | |
| esac | |
| curl -L "$URL" -o stitching.tar.gz | |
| mkdir -p stitching && tar -zxvf stitching.tar.gz -C stitching | |
| mkdir -p pkg && cp -rp stitching/archive/* pkg/ | |
| # upstream: https://github.com/neuropoly/spinalcordtoolbox/blob/master/dev/{isct_propseg,isct_dice_coefficient} | |
| - name: get spinalcordtoolbox-dev | |
| run: | | |
| # TODO: get this building, then building in CI, and use the release from there. | |
| # These URLs contain a version that hasn't been recompiled since 2016. | |
| case "${{ matrix.os }}" in | |
| linux) | |
| URL="https://github.com/spinalcordtoolbox/spinalcordtoolbox-binaries/releases/download/binaries_dev/20160716_sct_binaries_dev_linux.tar.gz" | |
| ;; | |
| osx) | |
| URL="https://github.com/spinalcordtoolbox/spinalcordtoolbox-binaries/releases/download/binaries_dev/20161123_sct_binaries_dev_osx.tar.gz" | |
| ;; | |
| windows) | |
| URL="https://github.com/spinalcordtoolbox/spinalcordtoolbox-binaries/releases/download/binaries_dev/20220225_sct_binaries_dev_windows.tar.gz" | |
| ;; | |
| esac | |
| curl -L "$URL" -o spinalcordtoolbox-dev.tar.gz | |
| mkdir -p pkg | |
| mkdir -p spinalcordtoolbox-dev && tar -zxvf spinalcordtoolbox-dev.tar.gz -C spinalcordtoolbox-dev | |
| cp -rp spinalcordtoolbox-dev/* pkg/ | |
| # upstream: https://www.creatis.insa-lyon.fr/site7/en/ctrDetect | |
| - name: get ctrDetect | |
| run: | | |
| echo "test test trying to build for ${{ matrix.os }}" | |
| mkdir -p pkg | |
| case "${{ matrix.os }}" in | |
| linux) | |
| URL="http://www.creatis.insa-lyon.fr/~sdika/soft/ctrDetect-v1_x86_64.tar.gz" | |
| curl -L "$URL" -o ctrDetect.tar.gz | |
| tar -zxvf ctrDetect.tar.gz | |
| cp -p ctrDetect/{spine_detect,spine_train_svm} pkg/ | |
| mv pkg/spine_train_svm pkg/train_svm # we have this one named unusually | |
| ;; | |
| osx) | |
| URL="http://www.creatis.insa-lyon.fr/~sdika/soft/ctrDetect-v1_macos10.11.tar.gz" | |
| curl -L "$URL" -o ctrDetect.tar.gz | |
| tar -zxvf ctrDetect.tar.gz | |
| cp -p ctrDetect/{spine_detect,spine_train_svm} pkg/ | |
| mv pkg/spine_train_svm pkg/train_svm # we have this one named unusually | |
| ;; | |
| windows) | |
| URL="http://www.creatis.insa-lyon.fr/~sdika/soft/ctrDetect-v1_win.zip" | |
| curl -L "$URL" -o ctrDetect.zip | |
| unzip ctrDetect.zip | |
| mv ctrDetect-win/ ctrDetect | |
| cp -p ctrDetect/{spine_detect,spine_train_svm}.exe pkg/ | |
| mv pkg/spine_train_svm.exe pkg/train_svm.exe # we have this one named unusually | |
| ;; | |
| esac | |
| cp -p ctrDetect/LICENSE.txt pkg/copyright/LICENSE_ctrDetect.txt | |
| cp -p ctrDetect/LICENSE_opencv.txt pkg/copyright/ | |
| chmod -x pkg/copyright/* # upstream accidentally marked the licenses as programs, oops. | |
| - name: "'isct_' prefix" | |
| run: | | |
| # TODO: there's gotta be a shorter way to do this | |
| # add the isct_ to programs that don't already have it | |
| cd pkg | |
| find ./ -type f -executable ! -name "isct_*" -maxdepth 1 | while read fname; do mv "$fname" $(dirname "$fname")/isct_$(basename "$fname"); done | |
| - name: package | |
| run: | | |
| # Github Artifacts only make .zips, so make a .tar.gz manually to preserve permissions/dates/etc | |
| tar -zcvf spinalcordtoolbox-binaries_${{ matrix.os }}.tar.gz -C pkg ./ | |
| - name: upload result | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: spinalcordtoolbox-binaries_${{ matrix.os }} | |
| path: spinalcordtoolbox-binaries_${{ matrix.os }}.tar.gz | |
| release: | |
| needs: [build] | |
| runs-on: ubuntu-latest | |
| # Only attach to release if workflow is run manually. (This allows the workflow to double as a PR test.) | |
| if: github.event_name == 'workflow_dispatch' | |
| steps: | |
| - uses: actions/download-artifact@v3 | |
| with: | |
| name: spinalcordtoolbox-binaries_linux | |
| - uses: actions/download-artifact@v3 | |
| with: | |
| name: spinalcordtoolbox-binaries_osx | |
| - uses: actions/download-artifact@v3 | |
| with: | |
| name: spinalcordtoolbox-binaries_windows | |
| - name: Create Release | |
| uses: ncipollo/release-action@v1 | |
| with: | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| tag: ${{ github.event.inputs.release_title }} | |
| name: Release ${{ github.sha }} | |
| draft: true | |
| artifacts: "spinalcordtoolbox-binaries_linux.tar.gz,spinalcordtoolbox-binaries_osx.tar.gz,spinalcordtoolbox-binaries_windows.tar.gz" | |
| artifactContentType: application/gzip |