To create PDXE xevaSet from raw data. Please make sure that you are using latest version of Xeva github https://github.com/bhklab/Xeva
devtools::install_github("bhklab/Xeva")
Raw data is in data/raw_data directory.
To create XevaSet run R/create_PDXE_xevaset.R
Output will be in PDXE_xevaSet/ directory.