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sriramlab

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  1. ProPCA ProPCA Public

    Fast EM algorithm for a Probabilistic PCA model for Genotype data

    C++ 21 6

  2. SCOPE SCOPE Public

    Scalable population structure inference

    C++ 18 3

  3. AutoComplete AutoComplete Public

    Python 18 2

  4. ArchIE ArchIE Public

    A statistical framework for reference-free inference of archaic local ancestry

    C 15 3

  5. OrientAGraph OrientAGraph Public

    C++ 11 1

  6. FastKAST FastKAST Public

    Jupyter Notebook 10 2

Repositories

Showing 10 of 19 repositories
  • FAME Public

    This is the software for FAst Marginal Epistasis test (FAME)

    sriramlab/FAME’s past year of commit activity
    C++ 2 MIT 3 0 0 Updated Jan 15, 2025
  • QuadKAST Public

    A Scalable Adaptive Quadratic Kernel Method for Interpretable Epistasis Analysis in Complex Traits

    sriramlab/QuadKAST’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jan 8, 2025
  • GENIE Public

    Gene Environment Interaction Estimator

    sriramlab/GENIE’s past year of commit activity
    C++ 6 MIT 0 1 0 Updated Jan 8, 2025
  • FastKAST Public
    sriramlab/FastKAST’s past year of commit activity
    Jupyter Notebook 10 2 0 0 Updated Dec 31, 2024
  • Simulator Public

    Efficient large scale phenotype simulator

    sriramlab/Simulator’s past year of commit activity
    C++ 1 MIT 0 0 0 Updated Nov 15, 2024
  • SUMRHE Public

    Summary statistics-based Randomized Haseman-Elston regression

    sriramlab/SUMRHE’s past year of commit activity
    Python 6 0 0 0 Updated Oct 24, 2024
  • PyRHE Public

    An efficient Python package for Randomized Haseman–Elston regression for Multi-variance Components

    sriramlab/PyRHE’s past year of commit activity
    Jupyter Notebook 4 0 0 1 Updated Oct 8, 2024
  • RHE-mc Public

    Randomized Haseman–Elston regression for Multi-variance Components

    sriramlab/RHE-mc’s past year of commit activity
    C++ 8 BSD-3-Clause 2 0 1 Updated Jul 2, 2024
  • OrientAGraph Public
    sriramlab/OrientAGraph’s past year of commit activity
    C++ 11 GPL-3.0 1 3 0 Updated May 13, 2024
  • AutoComplete Public
    sriramlab/AutoComplete’s past year of commit activity
    Python 18 2 0 0 Updated Jul 6, 2023
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