Updated copyright year and headers.

statnet · Jan 9, 2025 · 3c9a97e · 3c9a97e
1 parent 4432ece
commit 3c9a97e
Show file tree

Hide file tree

Showing 400 changed files with 443 additions and 398 deletions.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,6 +1,6 @@
 Package: ergm
-Version: 4.8.0-7535
-Date: 2025-01-04
+Version: 4.8.0-7549
+Date: 2025-01-09
 Title: Fit, Simulate and Diagnose Exponential-Family Models for Networks
 Authors@R: c(
              person(c("Mark", "S."), "Handcock", role=c("aut"), email="[email protected]"),

diff --git a/LICENSE b/LICENSE
@@ -37,7 +37,7 @@ Martina Morris, University of Washington
 
 The 'statnet' development team
 
-Copyright 2003-2024
+Copyright 2003-2025
 
 Other contributors
 ====================

diff --git a/R/InitErgmConstraint.R b/R/InitErgmConstraint.R
@@ -5,7 +5,7 @@
 #  open source, and has the attribution requirements (GPL Section 7) at
 #  https://statnet.org/attribution .
 #
-#  Copyright 2003-2024 Statnet Commons
+#  Copyright 2003-2025 Statnet Commons
 ################################################################################
 
 # Meta-constraint for a dot placeholder

diff --git a/R/InitErgmConstraint.blockdiag.R b/R/InitErgmConstraint.blockdiag.R
@@ -5,7 +5,7 @@
 #  open source, and has the attribution requirements (GPL Section 7) at
 #  https://statnet.org/attribution .
 #
-#  Copyright 2003-2024 Statnet Commons
+#  Copyright 2003-2025 Statnet Commons
 ################################################################################
 
 ## FIXME: There is almost certainly a better way to do this.

diff --git a/R/InitErgmConstraint.hints.R b/R/InitErgmConstraint.hints.R
@@ -5,7 +5,7 @@
 #  open source, and has the attribution requirements (GPL Section 7) at
 #  https://statnet.org/attribution .
 #
-#  Copyright 2003-2024 Statnet Commons
+#  Copyright 2003-2025 Statnet Commons
 ################################################################################
 InitErgmConstraint.TNT<-function(nw, arglist, ...){
   .Deprecate_once("sparse")

diff --git a/R/InitErgmConstraint.operator.R b/R/InitErgmConstraint.operator.R
@@ -1,11 +1,11 @@
-#  File R/InitErgmConstraint.R in package ergm, part of the
+#  File R/InitErgmConstraint.operator.R in package ergm, part of the
 #  Statnet suite of packages for network analysis, https://statnet.org .
 #
 #  This software is distributed under the GPL-3 license.  It is free,
 #  open source, and has the attribution requirements (GPL Section 7) at
 #  https://statnet.org/attribution .
 #
-#  Copyright 2003-2024 Statnet Commons
+#  Copyright 2003-2025 Statnet Commons
 ################################################################################
 
 #' @templateVar name Dyads

diff --git a/R/InitErgmProposal.R b/R/InitErgmProposal.R
@@ -5,7 +5,7 @@
 #  open source, and has the attribution requirements (GPL Section 7) at
 #  https://statnet.org/attribution .
 #
-#  Copyright 2003-2024 Statnet Commons
+#  Copyright 2003-2025 Statnet Commons
 ################################################################################
 #===========================================================================
 # The <InitErgmProposal> file contains the following 24 functions for

diff --git a/R/InitErgmProposal.dyadnoise.R b/R/InitErgmProposal.dyadnoise.R
@@ -5,7 +5,7 @@
 #  open source, and has the attribution requirements (GPL Section 7) at
 #  https://statnet.org/attribution .
 #
-#  Copyright 2003-2024 Statnet Commons
+#  Copyright 2003-2025 Statnet Commons
 ################################################################################
 
 #' @templateVar name dyadnoiseTNT

diff --git a/R/InitErgmReference.R b/R/InitErgmReference.R
@@ -5,7 +5,7 @@
 #  open source, and has the attribution requirements (GPL Section 7) at
 #  https://statnet.org/attribution .
 #
-#  Copyright 2003-2024 Statnet Commons
+#  Copyright 2003-2025 Statnet Commons
 ################################################################################
 
 #' @templateVar name Bernoulli

diff --git a/R/InitErgmTerm.R b/R/InitErgmTerm.R
@@ -5,7 +5,7 @@
 #  open source, and has the attribution requirements (GPL Section 7) at
 #  https://statnet.org/attribution .
 #
-#  Copyright 2003-2024 Statnet Commons
+#  Copyright 2003-2025 Statnet Commons
 ################################################################################
 
 #NOTE: a number of undocumented terms have been removed from this file

diff --git a/R/InitErgmTerm.auxnet.R b/R/InitErgmTerm.auxnet.R
@@ -5,7 +5,7 @@
 #  open source, and has the attribution requirements (GPL Section 7) at
 #  https://statnet.org/attribution .
 #
-#  Copyright 2003-2024 Statnet Commons
+#  Copyright 2003-2025 Statnet Commons
 ################################################################################
 InitErgmTerm..sociomatrix<-function(nw, arglist, ...) {
   a <- check.ErgmTerm(nw, arglist,

diff --git a/R/InitErgmTerm.bipartite.R b/R/InitErgmTerm.bipartite.R
@@ -5,7 +5,7 @@
 #  open source, and has the attribution requirements (GPL Section 7) at
 #  https://statnet.org/attribution .
 #
-#  Copyright 2003-2024 Statnet Commons
+#  Copyright 2003-2025 Statnet Commons
 ################################################################################
 
 ################################################################################

diff --git a/R/InitErgmTerm.bipartite.degree.R b/R/InitErgmTerm.bipartite.degree.R
@@ -5,7 +5,7 @@
 #  open source, and has the attribution requirements (GPL Section 7) at
 #  https://statnet.org/attribution .
 #
-#  Copyright 2003-2024 Statnet Commons
+#  Copyright 2003-2025 Statnet Commons
 ################################################################################
 
 #NOTE: a number of undocumented terms have been removed from this file

diff --git a/R/InitErgmTerm.blockop.R b/R/InitErgmTerm.blockop.R
@@ -5,7 +5,7 @@
 #  open source, and has the attribution requirements (GPL Section 7) at
 #  https://statnet.org/attribution .
 #
-#  Copyright 2003-2024 Statnet Commons
+#  Copyright 2003-2025 Statnet Commons
 ################################################################################
 ## Creates a submodel that ignores any edges not within the
 ## blocks.

diff --git a/R/InitErgmTerm.coincidence.R b/R/InitErgmTerm.coincidence.R
@@ -5,7 +5,7 @@
 #  open source, and has the attribution requirements (GPL Section 7) at
 #  https://statnet.org/attribution .
 #
-#  Copyright 2003-2024 Statnet Commons
+#  Copyright 2003-2025 Statnet Commons
 ################################################################################
 
 #' @templateVar name coincidence

diff --git a/R/InitErgmTerm.dgw_sp.R b/R/InitErgmTerm.dgw_sp.R
@@ -5,7 +5,7 @@
 #  open source, and has the attribution requirements (GPL Section 7) at
 #  https://statnet.org/attribution .
 #
-#  Copyright 2003-2024 Statnet Commons
+#  Copyright 2003-2025 Statnet Commons
 ################################################################################
 
 ################################################################################

diff --git a/R/InitErgmTerm.diversity.R b/R/InitErgmTerm.diversity.R
@@ -1,3 +1,12 @@
+#  File R/InitErgmTerm.diversity.R in package ergm, part of the
+#  Statnet suite of packages for network analysis, https://statnet.org .
+#
+#  This software is distributed under the GPL-3 license.  It is free,
+#  open source, and has the attribution requirements (GPL Section 7) at
+#  https://statnet.org/attribution .
+#
+#  Copyright 2003-2025 Statnet Commons
+################################################################################
 #' @templateVar name nodecovrange
 #' @title Range of covariate values for neighbors of a node
 #' @description This term adds a single network statistic equalling

diff --git a/R/InitErgmTerm.extra.R b/R/InitErgmTerm.extra.R
@@ -5,7 +5,7 @@
 #  open source, and has the attribution requirements (GPL Section 7) at
 #  https://statnet.org/attribution .
 #
-#  Copyright 2003-2024 Statnet Commons
+#  Copyright 2003-2025 Statnet Commons
 ################################################################################
 # These are InitErgm functions that were never included in the public release.
 #NOTE: a number of undocumented terms have been removed from this file

diff --git a/R/InitErgmTerm.indices.R b/R/InitErgmTerm.indices.R
@@ -5,7 +5,7 @@
 #  open source, and has the attribution requirements (GPL Section 7) at
 #  https://statnet.org/attribution .
 #
-#  Copyright 2003-2024 Statnet Commons
+#  Copyright 2003-2025 Statnet Commons
 ################################################################################
 # This term is not meaningful for modelling, but it has the property
 # that its change score for dyad (i,j) is always (i,j). It is used by

diff --git a/R/InitErgmTerm.interaction.R b/R/InitErgmTerm.interaction.R
@@ -5,7 +5,7 @@
 #  open source, and has the attribution requirements (GPL Section 7) at
 #  https://statnet.org/attribution .
 #
-#  Copyright 2003-2024 Statnet Commons
+#  Copyright 2003-2025 Statnet Commons
 ################################################################################
 check_interact_term <- function(m, dependent_action){
   msg <- paste0("Change statistic interactions are poorly defined for dyad-dependent terms. Use ", sQuote("interact.dependent"), " term option to set the behavior.")

diff --git a/R/InitErgmTerm.operator.R b/R/InitErgmTerm.operator.R
@@ -5,7 +5,7 @@
 #  open source, and has the attribution requirements (GPL Section 7) at
 #  https://statnet.org/attribution .
 #
-#  Copyright 2003-2024 Statnet Commons
+#  Copyright 2003-2025 Statnet Commons
 ################################################################################
 #' Wrap a submodel's curved, empty network statistics, and extended
 #' state (read-only) specification (if present) for output from an

diff --git a/R/InitErgmTerm.projection.R b/R/InitErgmTerm.projection.R
@@ -5,7 +5,7 @@
 #  open source, and has the attribution requirements (GPL Section 7) at
 #  https://statnet.org/attribution .
 #
-#  Copyright 2003-2024 Statnet Commons
+#  Copyright 2003-2025 Statnet Commons
 ################################################################################
 #' @templateVar name Project
 #' @title Evaluation on a projection of a bipartite network

diff --git a/R/InitErgmTerm.spcache.R b/R/InitErgmTerm.spcache.R
@@ -5,7 +5,7 @@
 #  open source, and has the attribution requirements (GPL Section 7) at
 #  https://statnet.org/attribution .
 #
-#  Copyright 2003-2024 Statnet Commons
+#  Copyright 2003-2025 Statnet Commons
 ################################################################################
 
 .spcache.aux <- function(type){

diff --git a/R/InitErgmTerm.test.R b/R/InitErgmTerm.test.R
@@ -5,7 +5,7 @@
 #  open source, and has the attribution requirements (GPL Section 7) at
 #  https://statnet.org/attribution .
 #
-#  Copyright 2003-2024 Statnet Commons
+#  Copyright 2003-2025 Statnet Commons
 ################################################################################
 InitErgmTerm.test.abs.edges.minus.5<-function(nw, arglist, ...) {
   a <- check.ErgmTerm(nw, arglist,

diff --git a/R/InitErgmTerm.transitiveties.R b/R/InitErgmTerm.transitiveties.R
@@ -5,7 +5,7 @@
 #  open source, and has the attribution requirements (GPL Section 7) at
 #  https://statnet.org/attribution .
 #
-#  Copyright 2003-2024 Statnet Commons
+#  Copyright 2003-2025 Statnet Commons
 ################################################################################
 # This new InitErgmTerm function still needs to be tested:
 

diff --git a/R/InitWtErgmProposal.R b/R/InitWtErgmProposal.R
@@ -5,7 +5,7 @@
 #  open source, and has the attribution requirements (GPL Section 7) at
 #  https://statnet.org/attribution .
 #
-#  Copyright 2003-2024 Statnet Commons
+#  Copyright 2003-2025 Statnet Commons
 ################################################################################
 
 #' @templateVar name StdNormal

diff --git a/R/InitWtErgmTerm.R b/R/InitWtErgmTerm.R
@@ -5,7 +5,7 @@
 #  open source, and has the attribution requirements (GPL Section 7) at
 #  https://statnet.org/attribution .
 #
-#  Copyright 2003-2024 Statnet Commons
+#  Copyright 2003-2025 Statnet Commons
 ################################################################################
 
 binary_wrap <- function(InitFun, nw, a, valued_args, ddd, namemap = identity, cnmap = identity){

diff --git a/R/InitWtErgmTerm.operator.R b/R/InitWtErgmTerm.operator.R
@@ -5,7 +5,7 @@
 #  open source, and has the attribution requirements (GPL Section 7) at
 #  https://statnet.org/attribution .
 #
-#  Copyright 2003-2024 Statnet Commons
+#  Copyright 2003-2025 Statnet Commons
 ################################################################################
 InitWtErgmTerm.Passthrough <- function(nw, arglist, ...){
   out <- InitErgmTerm.Passthrough(nw, arglist, ...)

diff --git a/R/InitWtErgmTerm.test.R b/R/InitWtErgmTerm.test.R
@@ -5,7 +5,7 @@
 #  open source, and has the attribution requirements (GPL Section 7) at
 #  https://statnet.org/attribution .
 #
-#  Copyright 2003-2024 Statnet Commons
+#  Copyright 2003-2025 Statnet Commons
 ################################################################################
 InitWtErgmTerm.test.abs.sum.minus.5<-function(nw, arglist, ...) {
   a <- check.ErgmTerm(nw, arglist,

diff --git a/R/anova.ergm.R b/R/anova.ergm.R
@@ -5,7 +5,7 @@
 #  open source, and has the attribution requirements (GPL Section 7) at
 #  https://statnet.org/attribution .
 #
-#  Copyright 2003-2024 Statnet Commons
+#  Copyright 2003-2025 Statnet Commons
 ################################################################################
 ################################################################################
 # The <anova.ergm> function computes an analysis of variance table for a

diff --git a/R/anova.ergmlist.R b/R/anova.ergmlist.R
@@ -5,7 +5,7 @@
 #  open source, and has the attribution requirements (GPL Section 7) at
 #  https://statnet.org/attribution .
 #
-#  Copyright 2003-2024 Statnet Commons
+#  Copyright 2003-2025 Statnet Commons
 ################################################################################
 #################################################################################
 # The <anova.ergmlist> function computes an analysis of variance table for one

diff --git a/R/approx.hotelling.diff.test.R b/R/approx.hotelling.diff.test.R
@@ -5,7 +5,7 @@
 #  open source, and has the attribution requirements (GPL Section 7) at
 #  https://statnet.org/attribution .
 #
-#  Copyright 2003-2024 Statnet Commons
+#  Copyright 2003-2025 Statnet Commons
 ################################################################################
 .dtsq <- function(x, param, df, log = FALSE){
   fx <- x*(df - param + 1)/(param*df)

diff --git a/R/as.network.numeric.R b/R/as.network.numeric.R
@@ -5,7 +5,7 @@
 #  open source, and has the attribution requirements (GPL Section 7) at
 #  https://statnet.org/attribution .
 #
-#  Copyright 2003-2024 Statnet Commons
+#  Copyright 2003-2025 Statnet Commons
 ################################################################################
 
 #' Create a Simple Random network of a Given Size

diff --git a/R/build_term_index.R b/R/build_term_index.R
@@ -5,7 +5,7 @@
 #  open source, and has the attribution requirements (GPL Section 7) at
 #  https://statnet.org/attribution .
 #
-#  Copyright 2003-2024 Statnet Commons
+#  Copyright 2003-2025 Statnet Commons
 ################################################################################
 
 .termTable<-function(terms,merge.names=FALSE){

diff --git a/R/check.ErgmTerm.R b/R/check.ErgmTerm.R
@@ -5,7 +5,7 @@
 #  open source, and has the attribution requirements (GPL Section 7) at
 #  https://statnet.org/attribution .
 #
-#  Copyright 2003-2024 Statnet Commons
+#  Copyright 2003-2025 Statnet Commons
 ################################################################################
 
 ergm_Init_inform_once <- once(ergm_Init_inform)

diff --git a/R/control.ergm.R b/R/control.ergm.R
@@ -5,7 +5,7 @@
 #  open source, and has the attribution requirements (GPL Section 7) at
 #  https://statnet.org/attribution .
 #
-#  Copyright 2003-2024 Statnet Commons
+#  Copyright 2003-2025 Statnet Commons
 ################################################################################
 #' Auxiliary function for fine-tuning ERGM fitting.
 #' 

diff --git a/R/control.ergm.bridge.R b/R/control.ergm.bridge.R
@@ -5,7 +5,7 @@
 #  open source, and has the attribution requirements (GPL Section 7) at
 #  https://statnet.org/attribution .
 #
-#  Copyright 2003-2024 Statnet Commons
+#  Copyright 2003-2025 Statnet Commons
 ################################################################################
 
 

diff --git a/R/control.gof.R b/R/control.gof.R
@@ -5,7 +5,7 @@
 #  open source, and has the attribution requirements (GPL Section 7) at
 #  https://statnet.org/attribution .
 #
-#  Copyright 2003-2024 Statnet Commons
+#  Copyright 2003-2025 Statnet Commons
 ################################################################################
 #=================================================================
 # This file contains the 2 following functions for controlling

diff --git a/R/control.logLik.ergm.R b/R/control.logLik.ergm.R
@@ -5,7 +5,7 @@
 #  open source, and has the attribution requirements (GPL Section 7) at
 #  https://statnet.org/attribution .
 #
-#  Copyright 2003-2024 Statnet Commons
+#  Copyright 2003-2025 Statnet Commons
 ################################################################################
 
 

diff --git a/R/control.san.R b/R/control.san.R
@@ -5,7 +5,7 @@
 #  open source, and has the attribution requirements (GPL Section 7) at
 #  https://statnet.org/attribution .
 #
-#  Copyright 2003-2024 Statnet Commons
+#  Copyright 2003-2025 Statnet Commons
 ################################################################################
 
 

diff --git a/R/control.simulate.R b/R/control.simulate.R
@@ -5,7 +5,7 @@
 #  open source, and has the attribution requirements (GPL Section 7) at
 #  https://statnet.org/attribution .
 #
-#  Copyright 2003-2024 Statnet Commons
+#  Copyright 2003-2025 Statnet Commons
 ################################################################################
 
 #' Auxiliary for Controlling ERGM Simulation

diff --git a/R/data.R b/R/data.R
@@ -5,7 +5,7 @@
 #  open source, and has the attribution requirements (GPL Section 7) at
 #  https://statnet.org/attribution .
 #
-#  Copyright 2003-2024 Statnet Commons
+#  Copyright 2003-2025 Statnet Commons
 ################################################################################
 #' Two versions of an E. Coli network dataset
 #' 

diff --git a/R/ergm-defunct.R b/R/ergm-defunct.R
@@ -5,7 +5,7 @@
 #  open source, and has the attribution requirements (GPL Section 7) at
 #  https://statnet.org/attribution .
 #
-#  Copyright 2003-2024 Statnet Commons
+#  Copyright 2003-2025 Statnet Commons
 ################################################################################
 # The last home for functions to removed from ergm.