See MMseqs2 for code and binaries. This respository contains only the code to reproduce the analyses shown in the paper.
Kallenborn, F., Chacon, A., Hundt, C., Sirelkhatim, H., Didi, K., Dallago, C., Mirdita, M., Schmidt, B., and Steinegger, M. (2024) GPU-accelerated homology search with MMseqs2. bioRxiv, 2024.11.13.623350.