delete ATRX which cannot retrieve gdc gene exp due to gencode version…

…ing issue
stjude · Feb 26, 2025 · 6e3c028 · 6e3c028
1 parent c0eb9f8
commit 6e3c028
Showing 1 changed file with 2 additions and 6 deletions.
diff --git a/front/public/cards/geneExp.json b/front/public/cards/geneExp.json
@@ -2,7 +2,7 @@
     "ribbonMessage": "Please explore our newest tool, gene expression clustering.",
     "ppcalls": [
         {
-            "urlparam":"/?mass={%22dslabel%22:%22GDC%22,%22genome%22:%22hg38%22,%22nav%22:{%22header_mode%22:%22hidden%22},%22termfilter%22:{%22filter0%22:{%22op%22:%22and%22,%22content%22:[{%22op%22:%22in%22,%22content%22:{%22field%22:%22cases.project.project_id%22,%22value%22:[%22TCGA-GBM%22]}}]}},%22plots%22:[{%22chartType%22:%22hierCluster%22,%22dataType%22:%22geneExpression%22,%22terms%22:[{%22gene%22:%22AKT1%22,%22type%22:%22geneExpression%22},{%22gene%22:%22MYC%22,%22type%22:%22geneExpression%22},{%22gene%22:%22YAP1%22,%22type%22:%22geneExpression%22},{%22gene%22:%22CD109%22,%22type%22:%22geneExpression%22},{%22gene%22:%22BCL6%22,%22type%22:%22geneExpression%22},{%22gene%22:%22BRAF%22,%22type%22:%22geneExpression%22},{%22gene%22:%22CDKN2A%22,%22type%22:%22geneExpression%22},{%22gene%22:%22CD34%22,%22type%22:%22geneExpression%22},{%22gene%22:%22ALDH1A3%22,%22type%22:%22geneExpression%22},{%22gene%22:%22CTNNB1%22,%22type%22:%22geneExpression%22},{%22gene%22:%22CXCL14%22,%22type%22:%22geneExpression%22},{%22gene%22:%22E2F1%22,%22type%22:%22geneExpression%22},{%22gene%22:%22EGFR%22,%22type%22:%22geneExpression%22},{%22gene%22:%22PTEN%22,%22type%22:%22geneExpression%22},{%22gene%22:%22FAT1%22,%22type%22:%22geneExpression%22},{%22gene%22:%22FGFR1%22,%22type%22:%22geneExpression%22},{%22gene%22:%22FOXM1%22,%22type%22:%22geneExpression%22},{%22gene%22:%22IDH1%22,%22type%22:%22geneExpression%22},{%22gene%22:%22IDH2%22,%22type%22:%22geneExpression%22},{%22gene%22:%22HOXA10%22,%22type%22:%22geneExpression%22},{%22gene%22:%22HOXA13%22,%22type%22:%22geneExpression%22},{%22gene%22:%22HOXA9%22,%22type%22:%22geneExpression%22},{%22gene%22:%22LAT1%22,%22type%22:%22geneExpression%22},{%22gene%22:%22MAPK1%22,%22type%22:%22geneExpression%22},{%22gene%22:%22MAPK3%22,%22type%22:%22geneExpression%22},{%22gene%22:%22MMP1%22,%22type%22:%22geneExpression%22},{%22gene%22:%22MGMT%22,%22type%22:%22geneExpression%22},{%22gene%22:%22NOTCH3%22,%22type%22:%22geneExpression%22},{%22gene%22:%22PIK3CA%22,%22type%22:%22geneExpression%22},{%22gene%22:%22PDGFRA%22,%22type%22:%22geneExpression%22},{%22gene%22:%22RB1%22,%22type%22:%22geneExpression%22},{%22gene%22:%22TP53%22,%22type%22:%22geneExpression%22},{%22gene%22:%22WWTR1%22,%22type%22:%22geneExpression%22},{%22gene%22:%22ATRX%22,%22type%22:%22geneExpression%22},{%22gene%22:%22ROS1%22,%22type%22:%22geneExpression%22}],%22termgroups%22:[{%22name%22:%22Variables%22,%22lst%22:[{%22id%22:%22case.diagnoses.age_at_diagnosis%22},{%22id%22:%22case.demographic.gender%22},{%22id%22:%22case.project.project_id%22},{%22id%22:%22case.tissue_source_site.name%22}]}]}]}",
+            "urlparam":"/?mass={%22dslabel%22:%22GDC%22,%22genome%22:%22hg38%22,%22nav%22:{%22header_mode%22:%22hidden%22},%22termfilter%22:{%22filter0%22:{%22op%22:%22and%22,%22content%22:[{%22op%22:%22in%22,%22content%22:{%22field%22:%22cases.project.project_id%22,%22value%22:[%22TCGA-GBM%22]}}]}},%22plots%22:[{%22chartType%22:%22hierCluster%22,%22dataType%22:%22geneExpression%22,%22terms%22:[{%22gene%22:%22AKT1%22,%22type%22:%22geneExpression%22},{%22gene%22:%22MYC%22,%22type%22:%22geneExpression%22},{%22gene%22:%22YAP1%22,%22type%22:%22geneExpression%22},{%22gene%22:%22CD109%22,%22type%22:%22geneExpression%22},{%22gene%22:%22BCL6%22,%22type%22:%22geneExpression%22},{%22gene%22:%22BRAF%22,%22type%22:%22geneExpression%22},{%22gene%22:%22CDKN2A%22,%22type%22:%22geneExpression%22},{%22gene%22:%22CD34%22,%22type%22:%22geneExpression%22},{%22gene%22:%22ALDH1A3%22,%22type%22:%22geneExpression%22},{%22gene%22:%22CTNNB1%22,%22type%22:%22geneExpression%22},{%22gene%22:%22CXCL14%22,%22type%22:%22geneExpression%22},{%22gene%22:%22E2F1%22,%22type%22:%22geneExpression%22},{%22gene%22:%22EGFR%22,%22type%22:%22geneExpression%22},{%22gene%22:%22PTEN%22,%22type%22:%22geneExpression%22},{%22gene%22:%22FAT1%22,%22type%22:%22geneExpression%22},{%22gene%22:%22FGFR1%22,%22type%22:%22geneExpression%22},{%22gene%22:%22FOXM1%22,%22type%22:%22geneExpression%22},{%22gene%22:%22IDH1%22,%22type%22:%22geneExpression%22},{%22gene%22:%22IDH2%22,%22type%22:%22geneExpression%22},{%22gene%22:%22HOXA10%22,%22type%22:%22geneExpression%22},{%22gene%22:%22HOXA13%22,%22type%22:%22geneExpression%22},{%22gene%22:%22HOXA9%22,%22type%22:%22geneExpression%22},{%22gene%22:%22LAT1%22,%22type%22:%22geneExpression%22},{%22gene%22:%22MAPK1%22,%22type%22:%22geneExpression%22},{%22gene%22:%22MAPK3%22,%22type%22:%22geneExpression%22},{%22gene%22:%22MMP1%22,%22type%22:%22geneExpression%22},{%22gene%22:%22MGMT%22,%22type%22:%22geneExpression%22},{%22gene%22:%22NOTCH3%22,%22type%22:%22geneExpression%22},{%22gene%22:%22PIK3CA%22,%22type%22:%22geneExpression%22},{%22gene%22:%22PDGFRA%22,%22type%22:%22geneExpression%22},{%22gene%22:%22RB1%22,%22type%22:%22geneExpression%22},{%22gene%22:%22TP53%22,%22type%22:%22geneExpression%22},{%22gene%22:%22WWTR1%22,%22type%22:%22geneExpression%22},{%22gene%22:%22ROS1%22,%22type%22:%22geneExpression%22}],%22termgroups%22:[{%22name%22:%22Variables%22,%22lst%22:[{%22id%22:%22case.diagnoses.age_at_diagnosis%22},{%22id%22:%22case.demographic.gender%22},{%22id%22:%22case.project.project_id%22},{%22id%22:%22case.tissue_source_site.name%22}]}]}]}",
             "runargs": {
                 "mass": {
                     "state": {
@@ -164,10 +164,6 @@
                                         "gene": "WWTR1",
                                         "type": "geneExpression"
                                     },
-                                    {
-                                        "gene": "ATRX",
-                                        "type": "geneExpression"
-                                    },
                                     {
                                         "gene": "ROS1",
                                         "type": "geneExpression"
@@ -204,4 +200,4 @@
             }
         }
     ]
-}
+}