Fix bug

sunbeam-labs · Nov 22, 2023 · 5ffa3f0 · 5ffa3f0
1 parent bf2bba8
commit 5ffa3f0
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/workflow/scripts/adapter_removal_paired.py b/workflow/scripts/adapter_removal_paired.py
@@ -28,7 +28,7 @@
                 "--cores",
                 str(snakemake.threads),
             ]
-            args += snakemake.config["qc"]["cutadapt_opts"].split(" ")
+            args += snakemake.config["qc"]["cutadapt_opts"].split(" ") if snakemake.config["qc"]["cutadapt_opts"] else []
             args += fwd_adapter_str.split(" ")
             args += rev_adapter_str.split(" ")
             args += [

diff --git a/workflow/scripts/adapter_removal_unpaired.py b/workflow/scripts/adapter_removal_unpaired.py
@@ -27,7 +27,7 @@
                 "--cores",
                 str(snakemake.threads),
             ]
-            args += snakemake.config["qc"]["cutadapt_opts"].split(" ")
+            args += snakemake.config["qc"]["cutadapt_opts"].split(" ") if snakemake.config["qc"]["cutadapt_opts"] else []
             args += fwd_adapter_str.split(" ")
             args += rev_adapter_str.split(" ")
             args += [