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@Ulthran Ulthran released this 23 Apr 16:02
· 34 commits to main since this release
v4.6.0
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Notes

This PR updates the remove_low_complexity, filter_reads, and parse_fastq functions to (dramatically) improve memory efficiency.

What's Changed

  • 485 fix filter reads and remove low complexity memory inefficiency by @Ulthran in #487

Full Changelog: v4.5.2...v4.6.0
sunbeamlabs/sunbeam: Python: Python 3.12.3, Snakemake: 8.10.8, Conda: conda 24.3.0
sunbeamlabs/sunbeam:slim: Python: Python 3.12.3, Snakemake: 8.10.8, Conda: conda 24.3.0
sunbeamlabs/cutadapt: Python: Python 3.12.3, Cutadapt Version: 4.8
sunbeamlabs/komplexity: Rustc: rustc 1.77.2 (25ef9e3d8 2024-04-09), Komplexity komplexity v0.3.5
sunbeamlabs/qc: Python: Python 3.12.0, Conda: conda 24.3.0, BWA: Version: 0.7.18-r1243-dirty, FastQC: FastQC v0.12.1, Trimmomatic: 0.39
sunbeamlabs/reports: Python: Python 3.12.3, Numpy Version: 1.26.4, Pandas Version: 2.2.2

Contributors

Ulthran
Assets 3
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