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"Killed" on panther #99

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kevinkle opened this issue Jul 2, 2019 · 1 comment
Open

"Killed" on panther #99

kevinkle opened this issue Jul 2, 2019 · 1 comment
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@kevinkle
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kevinkle commented Jul 2, 2019

At 70 genomes and 109GB of graph data

-rwxr-----  1 kevin kevin 109G Jun 26 08:10 pangenome.lemongraph
-rwxr-----  1 kevin kevin 8.0K Jun 26 08:42 pangenome.lemongraph-lock

Not sure why, just got the output Killed from Snakemake
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kevinkle commented Jul 2, 2019

The incorrect memory profiling bit in our Snakefile was reading the memory as 91GB - I wonder if there's some where thing going on since lmdb pretends that the entire db is in memory and we're getting killed as a result (panther has 94.4GB or real memory)

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