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25 Open 49 Closed
25 Open 49 Closed
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Issues list

Switch to a base class for dgraph queries dgraph
#150 opened Aug 26, 2019 by kevinkle
Cache uids for all kmers dgraph
#149 opened Aug 23, 2019 by kevinkle
1
"uid_in" queries are slow dgraph
#145 opened Aug 22, 2019 by kevinkle
4
Don't call set_schema() if dgraph already initialized dgraph
#141 opened Aug 21, 2019 by kevinkle
Parallelize queries per path dgraph
#140 opened Aug 21, 2019 by kevinkle
Create a separate log for timing metrics
#138 opened Aug 21, 2019 by kevinkle
Add way to update Dgraph after bulk load dgraph
#137 opened Aug 20, 2019 by kevinkle
@chadlaing @kevinkle
Error when first calling rule dgraph via snakemake dgraph
#134 opened Aug 16, 2019 by kevinkle
2
Add support for setting port offset for Snakefile dgraph
#133 opened Aug 15, 2019 by kevinkle
Some way to get sets of genomes while accounting for sampling biases plugins
#112 opened Jul 11, 2019 by kevinkle
Investigate tagging genomes with ecological data
#110 opened Jul 10, 2019 by kevinkle
See about using path structure to do a similar filter to scoary
#102 opened Jul 2, 2019 by kevinkle
Core genome "plugin" plugins
#101 opened Jul 2, 2019 by kevinkle
Split additional functions into a "plugins" folder plugins
#100 opened Jul 2, 2019 by kevinkle
1
"Killed" on panther lemongraph
#99 opened Jul 2, 2019 by kevinkle
1
Move functions in Snakefile to a snake.py
#98 opened Jun 28, 2019 by kevinkle
Call lemongraph setup.py from our setup.py lemongraph
#97 opened Jun 28, 2019 by kevinkle
Consider adding Node metadata
#91 opened Jun 25, 2019 by kevinkle
1
Add check to DB map size before setting lemongraph
#88 opened Jun 24, 2019 by kevinkle
@kevinkle
Investigate visualizations for graph
#87 opened Jun 24, 2019 by kevinkle
Investigate how query time scales with graph size
#86 opened Jun 23, 2019 by kevinkle
@kevinkle
Investigate different sizes for k
#82 opened Jun 21, 2019 by kevinkle
@chadlaing @kevinkle
RecursionError: maximum recursion depth exceeded bug Something isn't working lemongraph
#77 opened Jun 21, 2019 by kevinkle
@kevinkle
2
Pangenome graph creation optimizations lemongraph
#64 opened Jun 19, 2019 by kevinkle
@kevinkle
9
switch node labels to node features (node attributes)
#46 opened May 29, 2019 by kevinkle
@kevinkle
1
ProTip! Follow long discussions with comments:>50.