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Phenotype classification refactoring (#25)
* Create two variants of phenotype classification: one which "erases" attractor knowledge, and second which creates per-attractor classes. * Fix line endings. * Make a copy of the test model.
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,47 @@ | ||
CEBPa -> CEBPa | ||
GATA1 -| CEBPa | ||
FOG1 -| CEBPa | ||
SCL -| CEBPa | ||
|
||
$cJun:(PU1 & !Gfi1) | ||
PU1 -> cJun | ||
Gfi1 -| cJun | ||
|
||
$EgrNab:((PU1 & cJun) & !Gfi1) | ||
Gfi1 -| EgrNab | ||
cJun -> EgrNab | ||
PU1 -> EgrNab | ||
|
||
$EKLF:(GATA1 & !Fli1) | ||
GATA1 -> EKLF | ||
Fli1 -| EKLF | ||
|
||
EKLF -| Fli1 | ||
GATA1 -> Fli1 | ||
|
||
$FOG1:(GATA1) | ||
GATA1 -> FOG1 | ||
|
||
$GATA1:(((GATA1 | GATA2) | Fli1) & !PU1) | ||
GATA1 -> GATA1 | ||
GATA2 -> GATA1 | ||
PU1 -| GATA1 | ||
Fli1 -> GATA1 | ||
|
||
FOG1 -| GATA2 | ||
GATA1 -| GATA2 | ||
PU1 -| GATA2 | ||
GATA2 -> GATA2 | ||
|
||
$Gfi1:(CEBPa & !EgrNab) | ||
CEBPa -> Gfi1 | ||
EgrNab -| Gfi1 | ||
|
||
CEBPa -> PU1 | ||
PU1 -> PU1 | ||
GATA2 -| PU1 | ||
GATA1 -| PU1 | ||
|
||
$SCL:(GATA1 & !PU1) | ||
GATA1 -> SCL | ||
PU1 -| SCL |
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