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Safer video loading from SLP (#119) #581

Safer video loading from SLP (#119)

Safer video loading from SLP (#119) #581

Workflow file for this run

# Continuous integration
name: CI
on:
pull_request:
types: [opened, reopened, synchronize]
paths:
- "sleap_io/**"
- "tests/**"
- ".github/workflows/ci.yml"
- "environment.yml"
push:
branches:
- main
paths:
- "sleap_io/**"
- "tests/**"
- ".github/workflows/ci.yml"
- "environment.yml"
jobs:
# Lint with black and docstring check with pydocstyle
lint:
# This job runs:
#
# 1. Linting with black
#
# 2. Docstring style checking with pydocstyle
# Note: This uses Google-style docstring convention
# Ref: https://google.github.io/styleguide/pyguide.html
name: Lint
runs-on: "ubuntu-latest"
steps:
- name: Checkout repo
uses: actions/checkout@v4
- name: Set up Python
uses: actions/setup-python@v5
with:
python-version: "3.12"
- name: Install dependencies
run: |
pip install --editable .[dev]
- name: Run Black
run: |
black --check sleap_io tests
- name: Run pydocstyle
run: |
pydocstyle --convention=google sleap_io/
# Tests with pytest
tests:
timeout-minutes: 15
strategy:
fail-fast: false
matrix:
os: ["ubuntu-latest", "windows-latest", "macos-14"]
python: ["3.8", "3.12"]
exclude:
- os: "macos-14"
python: "3.8"
name: Tests (${{ matrix.os }}, Python ${{ matrix.python }})
runs-on: ${{ matrix.os }}
steps:
- name: Checkout repo
uses: actions/checkout@v3
- name: Setup Conda
uses: conda-incubator/setup-miniconda@v3
with:
miniforge-version: latest
conda-solver: "libmamba"
environment-file: environment.yml
activate-environment: sleap-io
python-version: ${{ matrix.python }}
- name: Print environment info
shell: bash -l {0}
run: |
which python
conda info
conda list
pip freeze
- name: Install graphics dependencies on Ubuntu
# https://github.com/conda-forge/opencv-feedstock/issues/401
if: ${{ startsWith(matrix.os, 'ubuntu') }}
shell: bash -l {0}
run: |
sudo apt-get update && sudo apt-get install libglapi-mesa libegl-mesa0 libegl1 libopengl0 libgl1-mesa-glx
- name: Test with pytest (with coverage)
shell: bash -l {0}
run: |
pytest --cov=sleap_io --cov-report=xml --durations=-1 tests/
- name: Upload coverage
uses: codecov/codecov-action@v4
with:
fail_ci_if_error: true
verbose: false
token: ${{ secrets.CODECOV_TOKEN }}