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Add skeleton utilities #76
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WalkthroughThe recent updates to the Changes
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Recent Review DetailsConfiguration used: CodeRabbit UI Files selected for processing (1)
Files skipped from review as they are similar to previous changes (1)
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Actionable comments posted: 4
@@ -183,7 +183,7 @@ def __len__(self) -> int: | |||
"""Return the number of nodes in the skeleton.""" | |||
return len(self.nodes) | |||
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|||
def index(self, node: Union[Node, str]) -> int: | |||
def index(self, node: Node | str) -> int: |
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Replace type comparison with isinstance()
for better practice and readability in the index
method.
- if type(node) == str:
+ if isinstance(node, str):
- elif type(node) == Node:
+ elif isinstance(node, Node):
Committable suggestion
‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation.
def index(self, node: Node | str) -> int: | |
def index(self, node: Node | str) -> int: |
@@ -192,11 +192,92 @@ | |||
else: | |||
raise IndexError(f"Invalid indexing argument for skeleton: {node}") | |||
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|||
def __getitem__(self, idx: Union[int, str]) -> Node: | |||
def __getitem__(self, idx: int | str) -> Node: |
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Replace type comparison with isinstance()
for better practice and readability in the __getitem__
method.
- if type(idx) == int:
+ if isinstance(idx, int):
- elif type(idx) == str:
+ elif isinstance(idx, str):
Committable suggestion
‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation.
def __getitem__(self, idx: int | str) -> Node: | |
def __getitem__(self, idx: int | str) -> Node: |
if edge.source not in self.nodes: | ||
self.add_node(edge.source) | ||
if edge.destination not in self.nodes: | ||
self.add_node(edge.destination) |
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Undefined variable edge
used in add_edge
. It seems you meant to use src
instead.
- if edge.source not in self.nodes:
+ if src.source not in self.nodes:
- if edge.destination not in self.nodes:
+ if src.destination not in self.nodes:
Committable suggestion
‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation.
if edge.source not in self.nodes: | |
self.add_node(edge.source) | |
if edge.destination not in self.nodes: | |
self.add_node(edge.destination) | |
if src.source not in self.nodes: | |
self.add_node(edge.source) | |
if src.destination not in self.nodes: | |
self.add_node(edge.destination) |
Args: | ||
node: A `Node` object or a string name to create a new node. | ||
""" | ||
if type(node) == str: |
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Replace type comparison with isinstance()
for better practice and readability in the add_node
method.
- if type(node) == str:
+ if isinstance(node, str):
Committable suggestion
‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation.
if type(node) == str: | |
if isinstance(node, str): |
Codecov ReportAll modified and coverable lines are covered by tests ✅
Additional details and impacted files@@ Coverage Diff @@
## main #76 +/- ##
==========================================
+ Coverage 94.45% 94.65% +0.19%
==========================================
Files 13 13
Lines 1443 1497 +54
==========================================
+ Hits 1363 1417 +54
Misses 80 80 ☔ View full report in Codecov by Sentry. |
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Actionable comments posted: 0
Actionable comments outside the diff hunks (1)
sleap_io/model/skeleton.py (1)
Line range hint
10-10
: Remove unused importUnion
.- from typing import Optional, Tuple, Union + from typing import Optional, Tuple
Skeleton.add_node
: Add a node by name or object.Skeleton.add_edge
: Add an edge by lists of names or objects.Skeleton.add_symmetry
: Add a symmetry edge by lists of names or objects.Summary by CodeRabbit