allow output file name to be specified #1157
Workflow file for this run
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| name: build | |
| on: [push, pull_request] | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| max-parallel: 4 | |
| matrix: | |
| os: [ubuntu-latest, macos-latest] | |
| python-version: ["3.8", "3.10"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache: 'pip' | |
| - name: Install BEDTools (Linux) | |
| run: sudo apt-get install bedtools libmagickwand-dev | |
| if: matrix.os == 'ubuntu-latest' | |
| - name: Install BEDTools (macOS) | |
| run: brew install bedtools imagemagick | |
| if: matrix.os == 'macos-latest' | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -e . | |
| - name: Test with pytest | |
| run: | | |
| pip install PyYAML pytest pytest-cov pytest-benchmark mock | |
| pytest --cov=jcvi tests |