Use setup_lfs action in compare refdata pipeline
#64
Workflow file for this run
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| name: compare-refdata | |
| on: | |
| repository_dispatch: | |
| types: [compare-refdata-command] | |
| workflow_dispatch: | |
| workflow_call: # to be called by pre release workflow | |
| pull_request: | |
| branches: | |
| - '*' | |
| env: | |
| PYTEST_FLAGS_COMPARE: --tardis-refdata=${{ github.workspace }}/tardis-refdata --tardis-regression-data=${{ github.workspace }}/tardis-regression-data --generate-reference | |
| REF2_HASH: origin/master | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| jobs: | |
| build: | |
| if: github.repository_owner == 'tardis-sn' | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Setup LFS | |
| uses: tardis-sn/tardis/.github/actions/setup_lfs@master | |
| - name: Checkout TARDIS (master) | |
| uses: actions/checkout@v4 | |
| if: ${{ (github.event_name == 'workflow_dispatch') || (github.event_name == 'schedule') }} # for checking master | |
| with: | |
| repository: tardis-sn/tardis | |
| path: tardis/ | |
| - name: Checkout TARDIS (PR) | |
| uses: actions/checkout@v4 | |
| if: ${{ (github.event_name == 'repository_dispatch') }} # for checking PRs | |
| with: | |
| repository: ${{ github.event.client_payload.pull_request.head.repo.full_name }} | |
| path: tardis/ | |
| ref: ${{ github.event.client_payload.pull_request.head.ref }} | |
| - name: Setup environment | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| miniforge-variant: Mambaforge | |
| miniforge-version: latest | |
| activate-environment: tardis | |
| use-mamba: true | |
| - name: Update environment | |
| working-directory: tardis/ | |
| run: mamba update -n tardis --file conda-linux-64.lock | |
| - name: Install Bokeh | |
| run: mamba install bokeh --channel conda-forge --no-update-deps --yes | |
| - name: Generate reference data for comparison | |
| working-directory: tardis/ | |
| run: pytest tardis ${{ env.PYTEST_FLAGS_COMPARE }} | |
| - name: Compare Reference Data | |
| working-directory: tardis-refdata/notebooks/ | |
| run: | | |
| jupyter nbconvert ref_data_compare.ipynb --to html --allow-errors --execute --ExecutePreprocessor.timeout=6000 | |
| - name: Upload comparison notebook | |
| uses: actions/upload-artifact@v2 | |
| with: | |
| name: Comparison Notebook | |
| path: tardis-refdata/notebooks/ref_data_compare.html | |
| - name: Check if reference data are equal | |
| run: if [ "$(cat ../refdata_compare_result)" == "REFDATA COMPARISON FAILED" ]; then exit 1; fi | |