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New functionality related to simulation and visualizers
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@liadomide liadomide released this 22 Jun 06:14
· 1427 commits to master since this release
1.5
5c046aa
  • New: export simulation configuration as JSON and reuse in web or console
  • Volumetric Viewers extended and improved (more datatypes can be visualized in volume - e.g. TimeSeriesRegion; better performance)
  • Color Scheme: allow to trim near-mean values in a color scheme
  • New: tracts visualizer, FCD analyzer
  • Refactored internal API for Adapters, with the purpose of simplifying console usage
  • Allen SDK Creator added
  • Reduced Wong-Wang default parameters updated to reflect usage in Hansen et al 2015
  • Coefficients for the Stefanescu-Jirsa 3D model have been corrected
  • ~5x accelerations for several models (Epileptor, Generic 2D Oscillator, Jansen-Rit, Reduced Wong-Wang)
  • Epileptor state variables names updated to those used publications, (y0->x1, y1->y1, y2->z, y3->x2, y4->y2, y5->g)
  • Models: new variables of interest for monitoring physiological signals e.g. LFP.
  • Variable order integrators now available which can improve accuracy and execution speed for many cases.
  • Conduction delays and coupling are now more efficient, especially for large and/or sparse connectivities.
  • Comprehensive review to library logging, turn on useful debug info with log_debug(True).
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