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Packaging and Improvements in Visualizers

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@liadomide liadomide released this 16 Oct 09:41
· 960 commits to master since this release
  • Add Structural Connectivity and Pearson Correlation Edge Bundle Viewers (circular viewers)
  • Replace MPLH5 Visualizers(PSE Continous, Wavelet, Fourier, Topographic, Pearson, Complex Coherence) with new ones based on D3.JS
  • Packages distributed with Pypi (tvb-library and tvb-framework)
  • Bug Fixes

Release Notes - The Virtual Brain - Version 1.5.4

* [TVB-2246] - Rewrite Wavelet Viewer
* [TVB-2260] - Remove MPLH5 from Matrix Viewer
* [TVB-2266] - Rewrite the Pearson correlation coefficients visualizer
* [TVB-2268] - Rewrite Complex Coherence Viewer
* [TVB-2271] - Region Labels missing from display (lCC/rCC)
* [TVB-2272] - Ensure that size of region is correctly computed
* [TVB-2273] - Make it possible to see edges directionality in the new viewer
* [TVB-2274] - Region labels on chord not visible at extremeties
* [TVB-2275] - Fix Mac build for H5py latest version 2.7.0
* [TVB-2276] - Should we move the viewer in the Connectvity Cockpit?
* [TVB-2277] - Should we move to Ajax for handling data?
* [TVB-2278] - Can we add other kinds of data to the chord viewer?
* [TVB-2283] - Remove MPLH5 backend
* [TVB-2284] - Create documentation
* [TVB-2289] - Document involved tools
* [TVB-2301] - Publish TVB on conda forge 
* [TVB-1818] - Local connectivity and surface activity view do not expect geometry to be split in hemispheres
* [TVB-1993] - Hardcoded user home not always appropriate
* [TVB-2072] - Help bubbles from the portlets do not work any more
* [TVB-2086] - Document other datasets shipped with distribution
* [TVB-2129] - SVG TS lines too thick in MS Edge
* [TVB-2212] - LC visualizer fails for mouse cortex
* [TVB-2240] - Wrong HTML displayed when a new TVB version is announced
* [TVB-2264] - Branching a simulation fails sometimes
* [TVB-2265] - When saving Region Stimulus region indices are incorrect
* [TVB-2267] - Fix Complex Coherence Analyzer after upgrade of numpy
* [TVB-2282] - Check fft algorithm
* [TVB-2293] - PSE Discreet does not work on 1D PSE results, and sometimes not in burst preview
* [TVB-2294] - Wrong labels display in Connectivity Edge Bundle viewer
* [TVB-2295] - PSE Continous displays wrong axes when one dimension is datatype
* [TVB-2296] - Branching w/ BOLD produces too many array indices
* [TVB-2299] - PSE Discreed shows wrong IDs in the overlay messages
* [TVB-2303] - Increase resolution for PSE Isocline
* [TVB-2304] - Brain Visualizer in Burst Preview is flicking
* [TVB-2305] - When starting TVB from tvb.app Octave is not recognized
* [TVB-2306] - When trying to delete an op in error nothing happens
* [TVB-2307] - Check button has no effect in Simulator - Configure Interface
* [TVB-2308] - PSE Continuous looses the current selected metric on TAB change in Burst page
* [TVB-2309] - When clicking on "Noise Configure" from a range we get redirected to Error page
* [TVB-2310] - Y axis labels not showing completely 
* [TVB-2311] - In pse-discrete portlet hover information is not displayed
* [TVB-1974] - Rewrite TVB visualizers which are based on MPLH5 with more modern web technology
* [TVB-2258] - Implement a circular viewer in TVB
* [TVB-2084] - Rewrite continuous pse view to use canvas
* [TVB-2286] - Configure and install TVB bot
* [TVB-2114] - Update PyPI package
* [TVB-2213] - Project Planning and Discussions
* [TVB-2243] - Put TVB iPython notebook example on HBP collab
* [TVB-2253] - Investigate not aligned data from Gary
* [TVB-2279] - Upgrade Debian on TVB VM
* [TVB-2297] - Testing Release 1.5.4 Beta for the Cluster
* [TVB-2300] - Test latest version before release
* [TVB-2302] - Upgrade and prepage cm-virtbrain for Ana's presentation
* [TVB-1837] - Flexible specification of time (ms, s, minutes)
* [TVB-2242] - Remove MPLH5 from Connectivity page
* [TVB-2259] - Include server URL when sending emails about new user creation
* [TVB-2270] - Improve Pearson viewer by adding mode and SV selector
* [TVB-2287] - Check Save Figure from all Visualizers