Merge pull request #28 from the-virtual-brain/push-on-dockerhub

Update docker image version

docker/Dockerfile

@@ -15,7 +15,7 @@ RUN apt-get update; apt-get install -y automake libtool build-essential git vim
                        wget python3.7 libpython3.7 libpython3-dev libncurses5-dev libreadline-dev libgsl0-dev cython3 \
                        python3.7-dev python3-pip python3-numpy python3-scipy python3-matplotlib python3-nose \
                        ipython3 python3-venv python-virtualenv python3-pyqt5 python-dev libgsl-dev libncurses-dev \
-                       subversion python3-mpi4py cmake zip unzip; \
+                       subversion cmake zip unzip; \
     apt-get clean
 
 RUN wget -q http://www.mpich.org/static/downloads/3.1.4/mpich-3.1.4.tar.gz \

docker/cosimulate_tvb_nest.sh

@@ -1,12 +1,12 @@
 #!/bin/sh
 
 echo "Pulling TVB-Nest docker image"
-/apps/daint/system/opt/sarus/1.1.0/bin/sarus pull thevirtualbrain/tvb-nest:0.3.1
+/apps/daint/system/opt/sarus/1.1.0/bin/sarus pull thevirtualbrain/tvb-nest:1.0.1
 
 start=$SECONDS
 
 echo "Start docker container"
-srun -C mc /apps/daint/system/opt/sarus/1.1.0/bin/sarus --debug run --mpi thevirtualbrain/tvb-nest:0.3.1 /home/docker/env/neurosci/bin/python /home/docker/installation_test.py
+srun -C mc /apps/daint/system/opt/sarus/1.1.0/bin/sarus --debug run --mpi thevirtualbrain/tvb-nest:1.0.1 /home/docker/env/neurosci/bin/python /home/docker/packages/tvb-multiscale/docker/installation_test.py
 
 duration=$(( SECONDS - start ))
 

docker/cosimulate_with_staging.sh

@@ -1,12 +1,12 @@
 #!/bin/sh
 
 echo "Pulling TVB-Nest docker image"
-/apps/daint/system/opt/sarus/1.1.0/bin/sarus pull thevirtualbrain/tvb-nest:0.3.1
+/apps/daint/system/opt/sarus/1.1.0/bin/sarus pull thevirtualbrain/tvb-nest:1.0.1
 
 start=$SECONDS
 
 echo "Start docker container"
-srun -C mc /apps/daint/system/opt/sarus/1.1.0/bin/sarus --debug run --mpi --mount=type=bind,source=$PWD,destination=$PWD thevirtualbrain/tvb-nest:0.3.1 /bin/bash -c "cd $PWD && /home/docker/env/neurosci/bin/python $1"
+srun -C mc /apps/daint/system/opt/sarus/1.1.0/bin/sarus --debug run --mpi --mount=type=bind,source=$PWD,destination=$PWD thevirtualbrain/tvb-nest:1.0.1 /bin/bash -c "cd $PWD && /home/docker/env/neurosci/bin/python $1"
 
 duration=$(( SECONDS - start ))