Merge pull request #37 from timflutre/initialisation_parameters

Add some game initialisation parameters

.github/workflows/tests.yml

@@ -29,3 +29,13 @@ jobs:
         path: playwright-report/
         retention-days: 30
 
+
+  initialise_data_from_script:
+    runs-on: ubuntu-latest
+    steps:
+    - uses: actions/checkout@v4
+    - uses: cachix/install-nix-action@v25
+      with:
+        github_access_token: ${{ secrets.GITHUB_TOKEN }}
+    - uses: DeterminateSystems/magic-nix-cache-action@v2
+    - run: nix develop -c -- nix run .\#initialise-data

flake.nix

@@ -19,6 +19,7 @@
           shinydashboard
           shinycssloaders
           shinyjs
+          shinyvalidate
           RSQLite
           MASS
           digest
@@ -29,6 +30,7 @@
           vistime
           scrm
           GenomicRanges
+          bsicons
 
           (pkgs.rPackages.buildRPackage {
             name = "rutilstimflutre";

global.R

@@ -27,6 +27,8 @@ source("src/fun/func_id.R", local = TRUE, encoding = "UTF-8")
 source("./src/fun/module_constants.R", local = TRUE, encoding = "UTF-8")
 source("./src/fun/module_breederList.R", local = TRUE, encoding = "UTF-8")
 source("./src/fun/func_dbRequests.R", local = TRUE, encoding = "UTF-8")
+source("./src/fun/module_gameInit_params.R", local = TRUE, encoding = "UTF-8")
+source("./src/fun/func_gameInit_validation.R", local = TRUE, encoding = "UTF-8")
 
 ## -------------------------------------------------------------------
 ## parameters

initialise_data.R

@@ -1,8 +1,39 @@
 #! /usr/bin/env Rscript
 
+params = list(
+  rng_seed = 1993,
+
+  cost.pheno.field = 50,
+  cost.pheno.patho = 0.1,
+  cost.allof = 0.1,
+  cost.autof = 0.25,
+  cost.haplodiplo = 1,
+  cost.geno.hd = 1,
+  cost.geno.ld = 0.5,
+  cost.geno.single = 0.02,
+  cost.register = 4,
+  initialBudget = 3900,
+
+  t1_mu = 100,
+  t1_min = 20,
+  t1_cv_g = 0.1,
+  t1_h2 = 0.3,
+
+  t2_mu = 15,
+  t2_min = 5,
+  t2_cv_g = 0.06,
+  t2_h2 = 0.6,
+
+  prop_pleio = 0.4,
+  cor_pleio = -0.7
+)
+
+
 out_report <- rmarkdown::render("./src/plantbreedgame_setup.Rmd",
   output_file = tempfile(),
-  encoding = "UTF-8"
+  encoding = "UTF-8",
+  params = params,
+  envir = new.env(parent = globalenv()),
 )
 file.copy(
   from = out_report,

playwright.config.js

@@ -73,8 +73,7 @@ module.exports = defineConfig({
 
   /* Run your local dev server before starting the tests */
   webServer: {
-    // command: "rm -r data; unzip data.zip -d .; nix run",
-    command: "nix run",
+    command: "rm -rf data/*; rm  data.zip; nix run",
     url: "http://127.0.0.1:3000",
     reuseExistingServer: true,
   },

src/dependencies.R

@@ -27,6 +27,7 @@ suppressPackageStartupMessages({
   library(shinydashboard)
   library(shinycssloaders)
   library(shinyjs)
+  library(shinyvalidate)
   library(RSQLite)
   library(MASS)
   library(digest)
@@ -36,6 +37,7 @@ suppressPackageStartupMessages({
   library(lubridate)
   library(vistime)
   library(tidyr)
+  library(bsicons)
 
   ## required packages NOT available on the CRAN
   ## R> devtools::install_github("timflutre/rutilstimflutre")