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Merge branch 'gh-pages-2023-11-06' into gh-pages
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joeflack4 committed Nov 4, 2023
2 parents 34c6c42 + 6dd2920 commit c9cf8eb
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2 changes: 1 addition & 1 deletion _config.yml
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# You can create any custom variable you would like, and they will be accessible
# in the templates via {{ site.myvariable }}.

title: TIMS Group
title: TIMS
subtitle: Terminology Infrastructure Management Services Group
email: [email protected]
description: >- # this means to ignore newlines until "baseurl:"
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14 changes: 7 additions & 7 deletions _pages/projects.md
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TIMS hosts a FHIR server that provides a unique set of ontologies, terminologies, with unique features such as text
search and SSSOM-formatted mappings.

- http://fhir.terminology-services.com
- http://20.3.198.176:8080/ (mirror)
- [http://fhir.terminology-services.com](http://fhir.terminology-services.com])
- [http://20.3.198.176:8080/](http://20.3.198.176:8080/) (mirror)
- [More information](/terminology-server/)

### SSSOM
SSSOM is a non-TIMS project, but TIMS contributes to this project by enabling it to export FHIR ConceptMap JSON
resources with SSSOM extensions.

https://github.com/mapping-commons/sssom-py/
[https://github.com/mapping-commons/sssom-py/](https://github.com/mapping-commons/sssom-py/)

### OWL-on-FHIR
Python-based non-minimalistic OWL to FHIR converter.

https://github.com/HOT-Ecosystem/owl-on-fhir
[https://github.com/HOT-Ecosystem/owl-on-fhir](https://github.com/HOT-Ecosystem/owl-on-fhir)

### OMOP2OWL-vocab
Convert OMOP vocab into OWL and SemanticSQL.

https://github.com/HOT-Ecosystem/omop2owl-vocab
[https://github.com/HOT-Ecosystem/omop2owl-vocab](https://github.com/HOT-Ecosystem/omop2owl-vocab)

### OMOP2FHIR-vocab
Convert OMOP vocab to FHIR.

https://github.com/HOT-Ecosystem/omop2fhir-vocab
[https://github.com/HOT-Ecosystem/omop2fhir-vocab](https://github.com/HOT-Ecosystem/omop2fhir-vocab)

### TimsUI
A minimalistic web UI for the TIMS terminology server.

https://github.com/HOT-Ecosystem/TimsUI
[https://github.com/HOT-Ecosystem/TimsUI](https://github.com/HOT-Ecosystem/TimsUI)
10 changes: 6 additions & 4 deletions _pages/team.md
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Director: Melissa Haendel
Director: Chris Chute
Project Management: Lisa Eskenazi
Development: Shahim Essaid
Development: Joe Flack
Development: Sigfried Gold
Development: Stephanie Hong
Development: Shahim Essaid
Development: Joe Flack
Contributor: Sigfried Gold
Contributor: Stephanie Hong
Contributor: Tim Putman
Contributor: Chris Roeder
15 changes: 9 additions & 6 deletions _pages/terminology-server.md
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TIMS hosts a FHIR server that provides a unique set of ontologies, terminologies, with unique features such as text
search and SSSOM-formatted mappings.

- http://fhir.terminology-services.com
- http://20.3.198.176:8080/ (mirror)
- [http://fhir.terminology-services.com](http://fhir.terminology-services.com)
- [http://20.3.198.176:8080/](http://20.3.198.176:8080/) (mirror)

### Notable features
[//]: # (TODO: need to clarify this list)
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- [SSSOM](https://mapping-commons.github.io/sssom/home/) extensions for ConceptMap resources

### Terminology content
#### CodeSystems
**CodeSystems**
[//]: # (TODO: need to clarify this list)
TIMS hosts several popular biomedical terminologies, but is unique in that it offers several biomedical ontologies in
the FHIR CodeSystem format.
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* HPO
* CompLoinc
* OMOP vocabularies
* And more on the way
* More on the way...

#### ConceptMap
Many of the terminologies and ontologies for which CodeSystems are available also
**ConceptMap**
Many of the terminologies and ontologies also contain mappings to other terminologies/ontologies, and are represented
as FHIR ConceptMap resources. TIMS uniquely includes additional fields from the [SSSOM](
https://mapping-commons.github.io/sssom/home/) extensions (Simple Standard fo Sharing Ontology Mappings) standard,
embedded as FHIR extensions.

[//]: # (#### ValueSet)

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