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Included all last changes.#7

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gedankenstuecke wants to merge 97 commits intotolotos:mastertolotos/opensnp_paper:masterfrom openSNP:masteropenSNP/opensnp_paper:masterCopy head branch name to clipboard

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Commits

Commits on Dec 19, 2011

• added more citations

  gedankenstuecke

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  39b762c

• some more references

  gedankenstuecke

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  9bc7913

• started working on discussion

  gedankenstuecke

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  b75aa41

• finished first draft of discussion, added some dtc-privacy-pubs

  gedankenstuecke

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  cb5b448

• first rework of draft :)

  gedankenstuecke

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  4b1fabf

Commits on Dec 20, 2011

• reworking of the draft, more references

  gedankenstuecke

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  66bfca3

Commits on Jan 22, 2012

• Added a new introduction, structured the results and discussion, moved a lot of paragraphs

  tolotos

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  78e9092

• some changes in the introduction

  gedankenstuecke

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  ba37b37

Commits on Jan 23, 2012

• New structure for the sharing genotypes and the crowdsourcing phenotypes section. The verbatim package is used to create multi-line comments

  tolotos

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  27e40b5

• Added new commenting system taken from here: http://stackoverflow.com/questions/539791/tips-for-collaboratively-editing-a-latex-document/539848#539848; changed already present comments

  tolotos

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  c2fa270

Commits on Jan 29, 2012

• worked on fabians comments

  gedankenstuecke

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  5b5aef8

Commits on Feb 3, 2012

• Fixed some typos, introduced JSON, changed some formulations

  philippbayer

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  9066461

Commits on Feb 8, 2012

• Wrote paragraph about the current DAS-methods

  philippbayer

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  3a5ca99

Commits on Feb 27, 2012

• Added some details on DAS, changed some statistics (phenotypes missing, as user_snps is still counting), fixed some types, changed some sentences.

  philippbayer

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  4835781

• Reverted some stats to be congruent with pics

  philippbayer

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  6c34b18

Commits on Mar 3, 2012

• rewored draft with fabian

  gedankenstuecke

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  1a2a6ab

Commits on Mar 4, 2012

• added citations

  gedankenstuecke

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  bdf320d

Commits on Mar 20, 2012

• added images, wrote abstract

  gedankenstuecke

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  4126a6e

Commits on Mar 25, 2012

• Replaced all don'ts etc by do not etc., fixed typos, started work on more coherent abstract, changed DAS-citation to earlier in text, fixed all of Manuel's small tips

  philippbayer

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  455493a

• Added v2-chip numbers. Removed space in superscript page 2 paragraph 3 (we have to move footnotes to references anyway) Added dbSNP-citation to papers.bib and text

  philippbayer

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  d294d5a

• Fixed colons and lowercases. Put footnotes into references according to http://blogs.plos.org/mfenner/2011/07/21/how-to-formally-cite-a-blog-post/

  philippbayer

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  d9ce4b2

Commits on Jul 17, 2012

• abstract redone

  philippbayer

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  01fef46

• Ironed out sentences, shortened a lot, re-arranged some stuff

  philippbayer

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  6420495

• I'm trapped in GitHub, help, I have to live off too-long sentences

  philippbayer

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  9f60df7

• Minimal mistake fixed, stopping for today

  philippbayer

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  f536d3c

Commits on Jul 18, 2012

• Introduced tables for survey-results. Made transition survey/openSNP easier.

  philippbayer

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  38091db

Commits on Aug 22, 2012

• made supplementary

  gedankenstuecke

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  ddad648

• restructure of paper itself

  gedankenstuecke

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  5d78e73

• added new paper

  gedankenstuecke

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  a78c861

• added pdf-version

  gedankenstuecke

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  93c7626

Commits on Aug 28, 2012

• Reworked abstract a little

  philippbayer

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  69f8220

• Merge branch 'master' of github.com:gedankenstuecke/opensnp_paper

  philippbayer

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  0770e47

• Now the abstract flows better

  philippbayer

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  3723985

Commits on Sep 2, 2012

• Added R-code for plots

  philippbayer

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  8523346

• Added plots

  philippbayer

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  005b446

Commits on Sep 30, 2012

• Adding affiliations for Helge Rausch

  tsujigiri

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  0a58ebe

• Merge pull request #2 from tsujigiri/patch-1

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  gedankenstuecke

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  fe5a85e

Commits on Oct 25, 2012

• Replaced old graphs by newest versions, added R-code, input-data to reproduce

  philippbayer

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  534c057

• erryday im merging

  philippbayer

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  c88d646

• Added acknowledgment to openSNP's users

  philippbayer

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  7a1332b

• Wrong ylab for genotypes.svg

  philippbayer

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  8d8b137

Commits on Oct 26, 2012

• Re-introduced Survey into main-text

  philippbayer

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  661a835

• added citations, edited text to accommodate for PGP & genome.gov data

  gedankenstuecke

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  6968636

Commits on Oct 27, 2012

• PNG-versions of the graphs, updated most stats (except # UserSNPs, still counting), moved tables, inserted new graphs

  philippbayer

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  e9a3018

• Merge branch 'master' of github.com:gedankenstuecke/opensnp_paper

  Show description for 46379e6
  philippbayer

  committed
  46379e6

• Added some more stats, changed title, only missing thing is the user-snps-counter

  philippbayer

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  450d6f9

• Finished work on all stats-numbers about SNPs.

  philippbayer

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  80ad4dc

Commits on Oct 28, 2012

• proofreading

  gedankenstuecke

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  d1aa1b4

• Merge branch 'master' of github.com:gedankenstuecke/opensnp_paper

  gedankenstuecke

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  efd7990

Commits on Oct 29, 2012

• Added piechart and dotchart on distribution of annotational sources.

  philippbayer

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  bb4f698

• Merge branch 'master' of https://github.com/gedankenstuecke/opensnp_paper

  philippbayer

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  e71a66f

• Changed my name slightly (because PB is all over pubmed, PEB is not.). Added dotchart, linked to in text.

  philippbayer

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  fc2c432

• Added note on insufficiently evaluated PGP-SNPs not being stored

  philippbayer

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  b5509e9

• work on tables

  gedankenstuecke

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  35d8b56

• finished tables & graphs

  gedankenstuecke

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  362eb98

• Added tif-conversions of my svg-plots. Changed in text, doesn't compile?

  philippbayer

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  ef9f506

• added wikimedia

  gedankenstuecke

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  44daab5

• compiled paper

  gedankenstuecke

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  8e80b22

• Merge branch 'master' of github.com:gedankenstuecke/opensnp_paper

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  gedankenstuecke

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  6a0a78c

• for viewing changed images to png

  gedankenstuecke

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  5dbc0cd

Commits on Oct 30, 2012

• Slight change of Dave Edwards' name - who knew US/UK/AUS lists academic titles different than Germany :P

  philippbayer

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  ea7adc9

• Merge branch 'master' of https://github.com/gedankenstuecke/opensnp_paper

  philippbayer

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  266e131

• Fixed two tiny typos, good to go from my end

  philippbayer

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  0104077

• Recompiled, with new pie-chart

  philippbayer

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  252e69f

• Added new paper-version with tif instead of png

  philippbayer

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  9f2eb66

• removed \includegraphics

  philippbayer

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  51bd1d1

• worked on images. submitted :)

  gedankenstuecke

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  c7b7199

Commits on Oct 31, 2012

• fixed ethics statement

  gedankenstuecke

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  f6de47c

Commits on May 15, 2013

• Removed (by comments) the survey.

  philippbayer

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  1c1cdf4

• Added my second affiliation.

  philippbayer

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  96aadc1

Commits on May 17, 2013

• Changed some minor formulations - added one paragraph about data validity

  philippbayer

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  bf70766

Commits on May 18, 2013

• did some work on the discussion of different platforms and crowdsourcing

  gedankenstuecke

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  04c89f9

Commits on May 30, 2013

• Added three DTC survey citations and summaries in introduction. Moved crowdsourcing platform part. Added crowdsourcing table. Fixed some minor things.

  philippbayer

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  0ebcf74

Commits on Jun 1, 2013

• Started to add text on FoldIt - fixed some minor words

  philippbayer

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  cae5b55

Commits on Jun 2, 2013

• Added FoldIt to table.

  philippbayer

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  f8f1475

• small changes to crowdsourcing + added citations

  gedankenstuecke

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  a1030b1

Commits on Jun 3, 2013

• Inserted citations. Changed formulation and table 1 according to last email.

  philippbayer

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  0ef0be6

• small changes in discussion, added citation for crowdsourced data

  

  Bastian Greshake

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  9b73e01

• added thanks to reviewers

  

  Bastian Greshake

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  ed96c54

• whops, linebreak in abstract

  

  Bastian Greshake

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  ad2a200

Commits on Jun 4, 2013

• Many minor changes to formulations. Replaced disease by illness. Normalized some spellings. Added short explanatory sentences.

  philippbayer

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  00dc4f8

• changes julia

  gedankenstuecke

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  235a2c0

• fixed linebreaks

  gedankenstuecke

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  0b93579

• compiled version

  gedankenstuecke

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  c866626

Commits on Jun 12, 2013

• well, made the F for figure uppercase so they might find it.

  gedankenstuecke

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  d984e8d

Commits on Sep 7, 2013

• first edit for 2nd major revision

  gedankenstuecke

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  08ddedd

Commits on Sep 12, 2013

• Added a few sentences, fixed some minor things

  philippbayer

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  be82c1e

• minor changes to philipps revision

  gedankenstuecke

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  e9e8270

• Changed one minor formulation

  philippbayer

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  4704072

• typos, some grammar etc.

  gedankenstuecke

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  9a90e27

• Merge branch 'master' of github.com:gedankenstuecke/opensnp_paper

  Show description for 94b45c5
  gedankenstuecke

  committed
  94b45c5

• fixed conflicts

  gedankenstuecke

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  e6d1bdc

Commits on Sep 13, 2013

• the version and rebuttal sent back to plos1

  gedankenstuecke

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  787974a

Commits on Dec 11, 2013

• made change to clarify SNPedia API

  gedankenstuecke

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  84b860d

Commits on Dec 12, 2013

• added citation for ethics approval and minor rewrite

  gedankenstuecke

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  878c3fa

Commits on Dec 13, 2013

• last changes to affiliations & text. with rebuttal

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  5296f3a

Commits on Jan 22, 2014

• edited according to PLOS publishing guidelines for final proof

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