pyVSimPipe

VSimPipe Simple command line tools for running simulations using qsub.

Be minded you need to have singularity installed to use singularity mode (default).

To start a new set of simulations first do:

> VSimPipe init

This will generate a set of default configuration files and a order file (order.csv).

Next, edit the necessary fields in the config file and order file.

Now, you are ready to send the simulations out:

> VSimPipe run

Options:
--log-level [DEBUG|INFO|WARNING|ERROR]
Logging verbosity level
--show-warnings TEXT Show warnings?
--help Show this message and exit.

Commands:
init
run

Install

Just run:

> pip install .