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adelegem committed Nov 19, 2024
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2 changes: 1 addition & 1 deletion README.Rmd
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Expand Up @@ -23,7 +23,7 @@ library(saltbush)
[![Codecov test coverage](https://codecov.io/gh/traitecoevo/saltbush/graph/badge.svg)](https://app.codecov.io/gh/traitecoevo/saltbush)
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# saltbush <img src="man/figures/saltbush_hex.png" align="right" width="200"/>
# saltbush <img src="man/figures/saltbush_hex.png" align="right" width="220"/>

*saltbush* processes drone imagery and ausplot vegetation survey data to calculate spectral + taxonomic diversity values for assessment of the 'spectral variability hypothesis'.

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27 changes: 16 additions & 11 deletions README.md
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Expand Up @@ -8,7 +8,7 @@
coverage](https://codecov.io/gh/traitecoevo/saltbush/graph/badge.svg)](https://app.codecov.io/gh/traitecoevo/saltbush)
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# saltbush <img src="man/figures/saltbush_hex.png" align="right" width="200"/>
# saltbush <img src="man/figures/saltbush_hex.png" align="right" width="220"/>

*saltbush* processes drone imagery and ausplot vegetation survey data to
calculate spectral + taxonomic diversity values for assessment of the
Expand Down Expand Up @@ -62,16 +62,21 @@ my.data <- ausplotsR::get_ausplots(my.Plot_IDs=c("SATFLB0004", "QDAMGD0022", "NT
field_diversity <- calculate_field_diversity(my.data)
field_diversity
#> $field_diversity
#> species_richness shannon_diversity simpson_diversity
#> 1 28 2.379688 0.8649789
#> 2 22 2.200076 0.8509874
#> 3 20 2.179534 0.8242833
#> 4 18 2.149992 0.8375000
#> pielou_evenness exp_shannon inv_simpson site
#> 1 0.7141483 10.801533 7.406252 SATFLB0004-58658
#> 2 0.7117585 9.025696 6.710843 NTASTU0002-58429
#> 3 0.7275464 8.842187 5.690977 QDAMGD0022-53501
#> 4 0.7438460 8.584786 6.153846 SATFLB0004-53705
#> site species_richness shannon_diversity
#> 1 SATFLB0004-58658 28 2.379688
#> 2 NTASTU0002-58429 22 2.200076
#> 3 QDAMGD0022-53501 20 2.179534
#> 4 SATFLB0004-53705 18 2.149992
#> simpson_diversity pielou_evenness exp_shannon inv_simpson
#> 1 0.8649789 0.7141483 10.801533 7.406252
#> 2 0.8509874 0.7117585 9.025696 6.710843
#> 3 0.8242833 0.7275464 8.842187 5.690977
#> 4 0.8375000 0.7438460 8.584786 6.153846
#> survey
#> 1 SATFLB0004-58658
#> 2 NTASTU0002-58429
#> 3 QDAMGD0022-53501
#> 4 SATFLB0004-53705
#>
#> $community_matrices
#> $community_matrices$`SATFLB0004-58658`
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