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note that Python3 is not currently supported
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transcript committed Jul 10, 2018
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Expand Up @@ -12,6 +12,8 @@ Version 2 of the SAMSA pipeline - faster! Lighter! More options! Less waiting

### Dependencies

SAMSA2 requires Python2 for aggregation scripts. Currently, this pipeline does not work with Python3, although an update is planned.

The following programs can be downloaded OR can be installed from the binaries provided in the programs/ folder.

1. DIAMOND, version 0.8.3: https://github.com/bbuchfink/diamond
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