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| <!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> Bryce Kille | Treangen lab at Rice University </title> <meta name="author" content="Treangen J. Treangen"> <meta name="description" content="4th Year Ph.D. student, big fan all things sequence analysis, high-performance computing, and discrete algorithms."> <meta name="keywords" content="jekyll, jekyll-theme, academic-website, portfolio-website"> <link rel="stylesheet" href="/assets/css/bootstrap.min.css?a4b3f509e79c54a512b890d73235ef04"> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/[email protected]/css/mdb.min.css" integrity="sha256-jpjYvU3G3N6nrrBwXJoVEYI/0zw8htfFnhT9ljN3JJw=" crossorigin="anonymous"> <link defer rel="stylesheet" href="/assets/css/academicons.min.css?f0b7046b84e425c55f3463ac249818f5"> <link defer rel="stylesheet" type="text/css" href="https://fonts.googleapis.com/css?family=Roboto:300,400,500,700|Roboto+Slab:100,300,400,500,700|Material+Icons&display=swap"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-github.css?591dab5a4e56573bf4ef7fd332894c99" media="" id="highlight_theme_light"> <link rel="shortcut icon" href="/assets/img/icon.png?1402e11f70634aa41af40aa7fea75a5e"> <link rel="stylesheet" href="/assets/css/main.css?d41d8cd98f00b204e9800998ecf8427e"> <link rel="canonical" href="/profiles/bkille/"> <script src="/assets/js/theme.js?9a0c749ec5240d9cda97bc72359a72c0"></script> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-native.css?5847e5ed4a4568527aa6cfab446049ca" media="none" id="highlight_theme_dark"> <script>initTheme();</script> </head> <body class="fixed-top-nav "> <header> <nav id="navbar" class="navbar navbar-light navbar-expand-sm fixed-top" role="navigation"> <div class="container"> <a class="navbar-brand title font-weight-lighter" href="/"> Treangen lab at Rice University </a> <button class="navbar-toggler collapsed ml-auto" type="button" data-toggle="collapse" data-target="#navbarNav" aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation"> <span class="sr-only">Toggle navigation</span> <span class="icon-bar top-bar"></span> <span class="icon-bar middle-bar"></span> <span class="icon-bar bottom-bar"></span> </button> <div class="collapse navbar-collapse text-right" id="navbarNav"> <ul class="navbar-nav ml-auto flex-nowrap"> <li class="nav-item "> <a class="nav-link" href="/">about </a> </li> <li class="nav-item "> <a class="nav-link" href="/people/">people </a> </li> <li class="nav-item "> <a class="nav-link" href="/blog/">blog </a> </li> <li class="nav-item "> <a class="nav-link" href="/publications/">publications </a> </li> <li class="nav-item "> <a class="nav-link" href="/repositories/">Code </a> </li> <li class="nav-item "> <a class="nav-link" href="/cv/">Lab PI </a> </li> <li class="nav-item"> <button id="search-toggle" title="Search" onclick="openSearchModal()"> <span class="nav-link">ctrl k <i class="ti ti-search"></i></span> </button> </li> <li class="toggle-container"> <button id="light-toggle" title="Change theme"> <i class="ti ti-sun-moon" id="light-toggle-system"></i> <i class="ti ti-moon-filled" id="light-toggle-dark"></i> <i class="ti ti-sun-filled" id="light-toggle-light"></i> </button> </li> </ul> </div> </div> </nav> <progress id="progress" value="0"> <div class="progress-container"> <span class="progress-bar"></span> </div> </progress> </header> <div class="container mt-5" role="main"> <div class="post"> <header class="post-header"> <h1 class="post-title">Bryce Kille</h1> <p class="post-description">4th Year Ph.D. student, big fan all things sequence analysis, high-performance computing, and discrete algorithms.</p> </header> <article> <p>Bryce (4th year PhD student, Computer Science) received his MS in Bioinformatics and BS in Computer Science + Chemistry from the University of Illinois at Urbana-Champaign. As an undergraduate, he worked at Dow Agrosciences in both the computational biology and cheminformatics groups. His projects included developing software for phylogeny analysis and creating models for compound activity prediction. During his Master’s program, Bryce worked in a biochemistry lab developing software for genome mining <a class="citation" href="#schwalen2018bioinformatic">(Schwalen et al., 2018)</a> as well as a on research project for creating bit-wise algorithms for the C++ STL (<a href="https://github.com/bkille/BitLib" rel="external nofollow noopener" target="_blank">BitLib</a>). One of his main interests is casting biological and chemical problems into theoretical computer science questions.</p> <p>As a PhD student, Bryce has worked on a range of sequence-analysis applications, such as genome alignment <a class="citation" href="#kille2023minmers">(Kille et al., 2023; Kille et al., 2024)</a> and variant calling <a class="citation" href="#kille2021accelerating">(Kille et al., 2021)</a>. Bryce is currently a <a href="https://www.gulfcoastconsortia.org/home/training/bmi-nlm/" rel="external nofollow noopener" target="_blank">NLM Biomedical Informatics predoctoral fellow</a> (NIH grant T15LM007093).</p> </article> <h2>References</h2> <div class="publications"> <h2 class="bibliography">2024</h2> <ol class="bibliography"><li> <div class="row"> <div id="kille2024parsnp" class="col-sm-10"> <div class="title">Parsnp 2.0: scalable core-genome alignment for massive microbial datasets</div> <div class="author"> Bryce Kille, Michael G Nute, Victor Huang, and <span class="more-authors" title="click to view 3 more authors" onclick=" var element=$(this); element.attr('title', ''); var more_authors_text=element.text() == '3 more authors' ? 'Eddie Kim, Adam M Phillippy, Todd J Treangen' : '3 more authors'; var cursorPosition=0; var textAdder=setInterval(function(){ element.html(more_authors_text.substring(0, cursorPosition + 1)); if (++cursorPosition == more_authors_text.length){ clearInterval(textAdder); } }, '10'); ">3 more authors</span> </div> <div class="periodical"> <em>Bioinformatics</em>, 2024 </div> <div class="periodical"> </div> <div class="links"> <a class="bibtex btn btn-sm z-depth-0" role="button">Bib</a> </div> <div class="badges"> <a href="https://scholar.google.com/citations?view_op=view_citation&hl=en&user=EUtkB0sAAAAJ&citation_for_view=EUtkB0sAAAAJ:K3LRdlH-MEoC" aria-label="Google Scholar link" role="button" rel="external nofollow noopener" target="_blank"> <img src="https://img.shields.io/badge/scholar-4-4285F4?logo=googlescholar&labelColor=beige" alt="4 Google Scholar citations"> </a> </div> <div class="bibtex hidden"> <figure class="highlight"><pre><code class="language-bibtex" data-lang="bibtex"><span class="nc">@article</span><span class="p">{</span><span class="nl">kille2024parsnp</span><span class="p">,</span> | ||
| <!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> Bryce Kille | Treangen lab at Rice University </title> <meta name="author" content="Treangen J. Treangen"> <meta name="description" content="4th Year Ph.D. student, big fan all things sequence analysis, high-performance computing, and discrete algorithms."> <meta name="keywords" content="jekyll, jekyll-theme, academic-website, portfolio-website"> <link rel="stylesheet" href="/assets/css/bootstrap.min.css?a4b3f509e79c54a512b890d73235ef04"> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/[email protected]/css/mdb.min.css" integrity="sha256-jpjYvU3G3N6nrrBwXJoVEYI/0zw8htfFnhT9ljN3JJw=" crossorigin="anonymous"> <link defer rel="stylesheet" href="/assets/css/academicons.min.css?f0b7046b84e425c55f3463ac249818f5"> <link defer rel="stylesheet" type="text/css" href="https://fonts.googleapis.com/css?family=Roboto:300,400,500,700|Roboto+Slab:100,300,400,500,700|Material+Icons&display=swap"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-github.css?591dab5a4e56573bf4ef7fd332894c99" media="" id="highlight_theme_light"> <link rel="shortcut icon" href="/assets/img/icon.png?1402e11f70634aa41af40aa7fea75a5e"> <link rel="stylesheet" href="/assets/css/main.css?d41d8cd98f00b204e9800998ecf8427e"> <link rel="canonical" href="/profiles/bkille/"> <script src="/assets/js/theme.js?9a0c749ec5240d9cda97bc72359a72c0"></script> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-native.css?5847e5ed4a4568527aa6cfab446049ca" media="none" id="highlight_theme_dark"> <script>initTheme();</script> </head> <body class="fixed-top-nav "> <header> <nav id="navbar" class="navbar navbar-light navbar-expand-sm fixed-top" role="navigation"> <div class="container"> <a class="navbar-brand title font-weight-lighter" href="/"> Treangen lab at Rice University </a> <button class="navbar-toggler collapsed ml-auto" type="button" data-toggle="collapse" data-target="#navbarNav" aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation"> <span class="sr-only">Toggle navigation</span> <span class="icon-bar top-bar"></span> <span class="icon-bar middle-bar"></span> <span class="icon-bar bottom-bar"></span> </button> <div class="collapse navbar-collapse text-right" id="navbarNav"> <ul class="navbar-nav ml-auto flex-nowrap"> <li class="nav-item "> <a class="nav-link" href="/">about </a> </li> <li class="nav-item "> <a class="nav-link" href="/people/">people </a> </li> <li class="nav-item "> <a class="nav-link" href="/blog/">blog </a> </li> <li class="nav-item "> <a class="nav-link" href="/publications/">publications </a> </li> <li class="nav-item "> <a class="nav-link" href="/repositories/">Code </a> </li> <li class="nav-item "> <a class="nav-link" href="/cv/">Lab PI </a> </li> <li class="nav-item"> <button id="search-toggle" title="Search" onclick="openSearchModal()"> <span class="nav-link">ctrl k <i class="ti ti-search"></i></span> </button> </li> <li class="toggle-container"> <button id="light-toggle" title="Change theme"> <i class="ti ti-sun-moon" id="light-toggle-system"></i> <i class="ti ti-moon-filled" id="light-toggle-dark"></i> <i class="ti ti-sun-filled" id="light-toggle-light"></i> </button> </li> </ul> </div> </div> </nav> <progress id="progress" value="0"> <div class="progress-container"> <span class="progress-bar"></span> </div> </progress> </header> <div class="container mt-5" role="main"> <div class="post"> <header class="post-header"> <h1 class="post-title">Bryce Kille</h1> <p class="post-description">4th Year Ph.D. student, big fan all things sequence analysis, high-performance computing, and discrete algorithms.</p> </header> <article> <p>Bryce (4th year PhD student, Computer Science) received his MS in Bioinformatics and BS in Computer Science + Chemistry from the University of Illinois at Urbana-Champaign. As an undergraduate, he worked at Dow Agrosciences in both the computational biology and cheminformatics groups. His projects included developing software for phylogeny analysis and creating models for compound activity prediction. During his Master’s program, Bryce worked in a biochemistry lab developing software for genome mining <a class="citation" href="#schwalen2018bioinformatic">(Schwalen et al., 2018)</a> as well as a on research project for creating bit-wise algorithms for the C++ STL (<a href="https://github.com/bkille/BitLib" rel="external nofollow noopener" target="_blank">BitLib</a>). One of his main interests is casting biological and chemical problems into theoretical computer science questions.</p> <p>As a PhD student, Bryce has worked on a range of sequence-analysis applications, such as genome alignment <a class="citation" href="#kille2023minmers">(Kille et al., 2023; Kille et al., 2024)</a> and variant calling <a class="citation" href="#kille2021accelerating">(Kille et al., 2021)</a>. Bryce is currently a <a href="https://www.gulfcoastconsortia.org/home/training/bmi-nlm/" rel="external nofollow noopener" target="_blank">NLM Biomedical Informatics predoctoral fellow</a> (NIH grant T15LM007093).</p> </article> <h2>References</h2> <div class="publications"> <h2 class="bibliography">2024</h2> <ol class="bibliography"><li> <div class="row"> <div id="kille2024parsnp" class="col-sm-10"> <div class="title">Parsnp 2.0: scalable core-genome alignment for massive microbial datasets</div> <div class="author"> Bryce Kille, Michael G Nute, Victor Huang, and <span class="more-authors" title="click to view 3 more authors" onclick=" var element=$(this); element.attr('title', ''); var more_authors_text=element.text() == '3 more authors' ? 'Eddie Kim, Adam M Phillippy, Todd J Treangen' : '3 more authors'; var cursorPosition=0; var textAdder=setInterval(function(){ element.html(more_authors_text.substring(0, cursorPosition + 1)); if (++cursorPosition == more_authors_text.length){ clearInterval(textAdder); } }, '10'); ">3 more authors</span> </div> <div class="periodical"> <em>Bioinformatics</em>, 2024 </div> <div class="periodical"> </div> <div class="links"> <a class="bibtex btn btn-sm z-depth-0" role="button">Bib</a> </div> <div class="badges"> <a href="https://scholar.google.com/citations?view_op=view_citation&hl=en&user=EUtkB0sAAAAJ&citation_for_view=EUtkB0sAAAAJ:K3LRdlH-MEoC" aria-label="Google Scholar link" role="button" rel="external nofollow noopener" target="_blank"> <img src="https://img.shields.io/badge/scholar-5-4285F4?logo=googlescholar&labelColor=beige" alt="5 Google Scholar citations"> </a> </div> <div class="bibtex hidden"> <figure class="highlight"><pre><code class="language-bibtex" data-lang="bibtex"><span class="nc">@article</span><span class="p">{</span><span class="nl">kille2024parsnp</span><span class="p">,</span> | ||
| <span class="na">title</span> <span class="p">=</span> <span class="s">{Parsnp 2.0: scalable core-genome alignment for massive microbial datasets}</span><span class="p">,</span> | ||
| <span class="na">author</span> <span class="p">=</span> <span class="s">{Kille, Bryce and Nute, Michael G and Huang, Victor and Kim, Eddie and Phillippy, Adam M and Treangen, Todd J}</span><span class="p">,</span> | ||
| <span class="na">year</span> <span class="p">=</span> <span class="s">{2024}</span><span class="p">,</span> | ||
|
|
||
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