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Perk p2 single ext#1908

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ranocha merged 170 commits intotrixi-framework:maintrixi-framework/Trixi.jl:mainfrom warisa-r:PERK_p2_Single_extwarisa-r/Trixi.jl:PERK_p2_Single_extCopy head branch name to clipboardMay 23, 2024

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Commits on Jan 29, 2024

• Templates for PERK p2, p3

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• example

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Commits on Feb 2, 2024

• constructor changed

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• Modified so that both of the constructor stay

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• Merge pull request #20 from warisa-r/PERK_p2p3_Single

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Commits on Feb 8, 2024

• bring back eps

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• correct val

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Commits on Feb 14, 2024

• add constructor of PERK3

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• minor fixes

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Commits on Feb 15, 2024

• function and variable name adjustments

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• spelling fix

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Commits on Feb 16, 2024

• Merge branch 'PERK_p2p3_Single' into PERK_p2p3_Single

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Commits on Feb 18, 2024

• Merge pull request #21 from warisa-r/PERK_p2p3_Single

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Commits on Mar 3, 2024

• Change names and spacing according to style guide

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• Merge branch 'PERK_p2p3_Single' of github.com:warisa-r/Trixi.jl into PERK_p2p3_Single

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• spelling correction

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Commits on Mar 5, 2024

• Merge pull request DanielDoehring#24 from warisa-r/PERK_p2p3_Single

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• snake case

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• Merge branch 'PERK_p2p3_Single' of github.com:DanielDoehring/Trixi.jl into PERK_p2p3_Single

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• revisit perk single p2 p3

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• fmt

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• fmt

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• Merge branch 'main' into PERK_p2p3_Single

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• semantic ordering

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Commits on Mar 6, 2024

• add literature

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• Strip code of p = 3

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Commits on Mar 7, 2024

• Add the line to show the error of the elixir

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Commits on Mar 8, 2024

• Make adjustments to a test file and delete example of PERK3

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• Update Project.toml

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• Update examples/tree_1d_dgsem/elixir_advection_PERK2.jl

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• Add comments in an example of PERK2

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• Update src/Trixi.jl

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• Update src/time_integration/paired_explicit_runge_kutta/methods_PERK2.jl

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• Update src/time_integration/paired_explicit_runge_kutta/methods_PERK2.jl

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• Update src/time_integration/paired_explicit_runge_kutta/methods_PERK2.jl

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• Update src/time_integration/paired_explicit_runge_kutta/methods_PERK2.jl

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• add tspan as a parameter and adjust the elixir accordingly

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• add an additional constructor and modify the function compute_PERK2_butcher_tableau

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Commits on Mar 11, 2024

• Update src/time_integration/paired_explicit_runge_kutta/methods_PERK2.jl

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Commits on Mar 12, 2024

• update filter function in polynomial optimizer, add literature, and change se_factors to bc_factors

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• Merge branch 'PERK_p2_Single' of github.com:warisa-r/Trixi.jl into PERK_p2_Single

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• change tspan to have (,) instead of[,]. filter_eigenvalues minor adjustments

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Commits on Mar 14, 2024

• Merge branch 'main' into PERK_p2_Single

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• Update src/time_integration/paired_explicit_runge_kutta/polynomial_optimizer.jl

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• Apply suggestions from code review

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• Update src/time_integration/paired_explicit_runge_kutta/methods_PERK2.jl

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• Update src/time_integration/paired_explicit_runge_kutta/methods_PERK2.jl

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• Update src/time_integration/paired_explicit_runge_kutta/methods_PERK2.jl

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• Apply suggestions from code review

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• use readdlm instead of read_file

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• Update src/time_integration/paired_explicit_runge_kutta/methods_PERK2.jl

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• add DelimFIles

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• Unit tests

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• Merge branch 'main' into PERK_p2_Single

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• compat

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• ecos compat

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• compat

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• Merge branch 'main' into PERK_p2_Single

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• callbacks

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Commits on Mar 17, 2024

• increase allowed allocs

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• fmt

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• timer for step callbacks

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• deps compat

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• remove del files compat

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• skip delimitedfiles in downgrade compat

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• v1

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Commits on Mar 20, 2024

• Update src/time_integration/paired_explicit_runge_kutta/methods_PERK2.jl

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Commits on Mar 25, 2024

• Merge branch 'main' into PERK_p2_Single

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Commits on Apr 12, 2024

• modular imp of the integrator

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Commits on Apr 15, 2024

• modularized PolynamialOptimizer

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• PolynomialOpt modularized

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• use "fake" extension

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Commits on Apr 16, 2024

• make ECOS weakdep

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• fix name

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• comment + fmt

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Commits on Apr 18, 2024

• Merge branch 'main' into PERK_p2_Single_ext

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Commits on Apr 19, 2024

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Commits on Apr 22, 2024

• comment, fix, and make threshold optional

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• edit tspan and alive_interval

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• Merge branch 'main' into PERK_p2_Single_ext

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Commits on Apr 24, 2024

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• fmt

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• fix fmr in test unit

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• fix fmt in test_unit.jl

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• Merge branch 'PERK_p2_Single_ext' of github.com:warisa-r/Trixi.jl into PERK_p2_Single_ext

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Commits on Apr 29, 2024

• some fixes according to code review

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• add ECOS as a part of enabling TrixiConvexECOSExt.jl compiles

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• state functions and classes from Convex package used in polynomial optimization

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• remove unconditional output in bisection

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• add verbose as an optional argument for printing out some outputs during bisection and filtering eigenvalues

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• remove the file with upper case

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Commits on Apr 30, 2024

• Merge branch 'main' into PERK_p2_Single_ext

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• minor fix

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• Merge branch 'PERK_p2_Single_ext' of github.com:warisa-r/Trixi.jl into PERK_p2_Single_ext

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• move constructors outside of struct

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• alter some names from being abbreviated and some fixes

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• add comments for some functions and move all polynomial optimizaton related functions to TrixiConvexECOSExt.jl

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• add comments to functions computing butcher tableau

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• fmt

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Commits on May 2, 2024

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• fix PERK2's name

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• add short comment regarding PERK's abbreviation

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Commits on May 3, 2024

• fix export

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• Update src/time_integration/paired_explicit_runge_kutta/methods_PERK2.jl

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• Update src/time_integration/paired_explicit_runge_kutta/methods_PERK2.jl

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• Update src/time_integration/paired_explicit_runge_kutta/methods_PERK2.jl

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• Update src/time_integration/paired_explicit_runge_kutta/methods_PERK2.jl

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• minor corrections

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• remove exported of PERK functions in extension

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• set verbose's default value in kwarg

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Commits on May 4, 2024

• Merge branch 'main' into PERK_p2_Single_ext

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• fix path_monomial_coeffs

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• Merge branch 'PERK_p2_Single_ext' of github.com:warisa-r/Trixi.jl into PERK_p2_Single_ext

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• fmt

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• add ECOS as dependency in test/Project.toml

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• bring back polynomial_optimizer so that user can call the constructor with file path can use filter_eigvals without having to load Convex and ECOS

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• fix values for some tests and add use Convex and ECOS to load function extensions

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• fix error undefined b1

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• attempt to fix error from test by specifying Trixi.entropy

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• fmt

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• adjust the value of tests to allign with one in CI and add print command for a test in test_unit.jl

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Commits on May 5, 2024

• exclude convex warning

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• update test vals

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• more warning exclusions

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Commits on May 6, 2024

• Merge branch 'main' into PERK_p2_Single_ext

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• minor fix

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• add what is used from ECOS

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• spell check

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• add information about this PR in NEWS.md

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Commits on May 9, 2024

• change Trixi.entropy back to just entropy

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• Update src/time_integration/paired_explicit_runge_kutta/methods_PERK2.jl

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Commits on May 14, 2024

• Merge branch 'main' into PERK_p2_Single_ext

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• Update src/time_integration/paired_explicit_runge_kutta/methods_PERK2.jl

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