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@tyo-nu

Keith Tyo's laboratory at Northwestern University

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  1. MINE-Database MINE-Database Public

    Metabolic In silico Network Expansion (MINE) Database Construction and DB Logic

    Python 19 13

  2. MINE-Server MINE-Server Public

    RESTful API which serves as backend for tyo-nu/MINE-app

    Python 6

  3. MINE-app MINE-app Public

    Web application for the MINE databases

    CSS 4 1

  4. SimAL SimAL Public

    Active learning for selecting compounds for characterizing enzymes (published 2017)

    Python 2 1

  5. nextgen4b nextgen4b Public

    A suite of tools to help analyze positional error rates in next-gen sequencing data

    Python 1

  6. CellSort CellSort Public

    CellSort scripts (published 2016)

    Python 1 1

Repositories

Showing 10 of 21 repositories
  • ModelSEEDpy Public Forked from cshenry/ModelSEEDpy

    Python package for building and analyzing models using ModelSEED

    tyo-nu/ModelSEEDpy’s past year of commit activity
    Python 0 MIT 17 0 0 Updated Aug 6, 2024
  • DORA_XGB Public

    Supervised learning classifiers to predict feasibility of enzymatic reactions

    tyo-nu/DORA_XGB’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jul 21, 2024
  • tdt-data-storage-paper Public

    Repository for all code related to the TdT HEK cell data storage paper

    tyo-nu/tdt-data-storage-paper’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated May 3, 2024
  • PolyIDRS_Paper Public

    Code and Figures for the PolyIDRS paper.

    tyo-nu/PolyIDRS_Paper’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Feb 17, 2024
  • MINE-Database Public

    Metabolic In silico Network Expansion (MINE) Database Construction and DB Logic

    tyo-nu/MINE-Database’s past year of commit activity
    Python 19 MIT 13 2 4 Updated Feb 14, 2024
  • PHA_Design Public

    Repository containing resources for Polyhydroxyalkanoate design paper.

    tyo-nu/PHA_Design’s past year of commit activity
    0 MIT 0 0 0 Updated Feb 2, 2024
  • turtles Public

    TURTLES: Time-sensitive Untemplated Recording using TdT for Local Environmental Signals

    tyo-nu/turtles’s past year of commit activity
    Jupyter Notebook 0 1 0 7 Updated Feb 11, 2023
  • dynamic_cf_butanol_model Public

    Publication code repository for the dynamic kinetic model of cell-free metabolism and butanol synthesis (https://doi.org/10.1016/j.ymben.2023.01.009)

    tyo-nu/dynamic_cf_butanol_model’s past year of commit activity
    MATLAB 1 0 0 0 Updated Feb 3, 2023
  • MINE-Server Public

    RESTful API which serves as backend for tyo-nu/MINE-app

    tyo-nu/MINE-Server’s past year of commit activity
    Python 6 0 5 5 Updated Dec 8, 2022
  • pickaxe_paper Public
    tyo-nu/pickaxe_paper’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Nov 11, 2022
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