Update testing workflow and dependencies #17

	name: Test and Coverage

	on:
	push:
	branches: [ master ]
	pull_request:
	branches: [ master ]

	jobs:
	test-and-coverage:
	runs-on: ubuntu-latest

	steps:
	# Checkout the repository
	- name: Checkout code
	uses: actions/checkout@v3

	# Set up Miniconda and create the environment from environment.yml
	- name: Setup Miniconda
	uses: conda-incubator/setup-miniconda@v2
	with:
	auto-update-conda: true
	activate-environment: mimic_env
	environment-file: environment.yml
	python-version: "3.10"

	# Install your package in editable mode
	- name: Install Your Package
	shell: bash -l {0}
	run: \|
	eval "$(conda shell.bash hook)"
	conda activate mimic_env
	pip install -e .

	# Run tests with coverage reporting
	- name: Run tests with coverage
	shell: bash -l {0}
	run: \|
	eval "$(conda shell.bash hook)"
	conda activate mimic_env
	pytest --cov=mimic --cov-report=xml --cov-report=html

	# Upload the coverage report as an artifact
	- name: Upload coverage report
	uses: actions/upload-artifact@v3
	with:
	name: coverage-report
	path: htmlcov

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