Update testing workflow and dependencies #171
Workflow file for this run
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| name: Python package CI | |
| on: | |
| push: | |
| branches: [ master ] | |
| pull_request: | |
| branches: [ master ] | |
| permissions: | |
| contents: write | |
| jobs: | |
| update-requirements: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| fetch-depth: 0 | |
| - name: Set up Git | |
| run: | | |
| if [ "${{ github.event_name }}" = "pull_request" ] | |
| then | |
| BRANCH_NAME=${{ github.head_ref }} | |
| else | |
| BRANCH_NAME=$(echo ${GITHUB_REF#refs/heads/}) | |
| fi | |
| git checkout $BRANCH_NAME | |
| # Set up Conda | |
| - name: Set up Conda | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| auto-update-conda: true | |
| python-version: "3.10" | |
| miniconda-version: "latest" | |
| # Create mimic_env from environment.yml | |
| - name: Create mimic_env from environment.yml | |
| run: conda env create -f environment.yml | |
| # Activate mimic_env and install autopep8 | |
| - name: Activate mimic_env and install autopep8 | |
| shell: bash -l {0} | |
| run: | | |
| eval "$(conda shell.bash hook)" | |
| conda activate mimic_env | |
| conda install autopep8 | |
| - name: Format code with autopep8 | |
| shell: bash -l {0} | |
| run: | | |
| eval "$(conda shell.bash hook)" | |
| conda activate mimic_env | |
| autopep8 --in-place --aggressive --aggressive --recursive mimic/ | |
| # Activate mimic_env, install pip-tools, and compile requirements.txt | |
| - name: Install pip-tools and compile requirements.txt | |
| shell: bash -l {0} | |
| run: | | |
| eval "$(conda shell.bash hook)" | |
| conda activate mimic_env | |
| pip install pip-tools | |
| pip-compile --output-file requirements.txt requirements.in | |
| # Commit changes to the repository | |
| - name: Commit changes | |
| run: | | |
| git config --global user.email "[email protected]" | |
| git config --global user.name "GitHub Action" | |
| git add . | |
| git commit -m "Update requirements.txt and format code" || true | |
| git push origin HEAD | |
| continue-on-error: true # In case there are no changes | |
| - name: Upload updated requirements.txt | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: requirements | |
| path: requirements.txt | |
| compatibility-check: | |
| needs: update-requirements | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest, macos-latest, windows-latest] | |
| python-version: ["3.10"] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Download updated requirements.txt | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: requirements | |
| - name: Set up Conda | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| auto-update-conda: true | |
| python-version: "3.10" | |
| miniconda-version: "latest" | |
| # Create mimic_env from environment.yml, with adjustments for Windows compatibility | |
| - name: Create mimic_env from environment file | |
| shell: bash -l {0} | |
| run: | | |
| eval "$(conda shell.bash hook)" | |
| if [[ "${{ matrix.os }}" == "windows-latest" ]]; then | |
| conda env create -f environment_windows.yml | |
| else | |
| conda env create -f environment.yml | |
| fi | |
| # Activate mimic_env and install the package for compatibility check | |
| - name: Install dependencies for compatibility check | |
| shell: bash -l {0} | |
| run: | | |
| eval "$(conda shell.bash hook)" | |
| conda activate mimic_env | |
| pip install -e . |