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@ucl-pathgenomics

UCL Pathogen Genomics Group

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  1. HaROLD HaROLD Public

    Haplotype Reconstruction of Longitudinal Deep sequencing data

    Java 6 1

  2. cmvdrg cmvdrg Public

    !! DEPRECATED !! please visit ojcharles/herpesdrg --------------- Human Cytomegalovirus antiviral Drug Resistance Genotyping

    R 1 3

  3. hmmcluster hmmcluster Public

    hmmcluster - Hidden Markov Model clustering of nucleotide sequences. O Charles & R Goldstein.

    Java 1

  4. HCMV_resources_public HCMV_resources_public Public

    Useful resources for CMV analysis

    R 1

  5. PUn-of-HaROLD PUn-of-HaROLD Public

    Pretty Useful runtime of HaROLD

    Java

  6. NucleotideDiversity NucleotideDiversity Public

Repositories

Showing 9 of 9 repositories
  • hmmcluster Public

    hmmcluster - Hidden Markov Model clustering of nucleotide sequences. O Charles & R Goldstein.

    ucl-pathgenomics/hmmcluster’s past year of commit activity
    Java 1 0 1 0 Updated Dec 7, 2023
  • HCMV_ViralSignature Public

    This repo includes the code to calculate the probability scores of HCMV viral signature

    ucl-pathgenomics/HCMV_ViralSignature’s past year of commit activity
    R 0 MIT 0 0 0 Updated Dec 4, 2023
  • HCMV_resources_public Public

    Useful resources for CMV analysis

    ucl-pathgenomics/HCMV_resources_public’s past year of commit activity
    R 1 MIT 0 0 0 Updated Jul 10, 2023
  • HaROLD Public

    Haplotype Reconstruction of Longitudinal Deep sequencing data

    ucl-pathgenomics/HaROLD’s past year of commit activity
    Java 6 MIT 1 3 0 Updated Feb 13, 2023
  • SARS2-ResistanceDB Public

    Data and code that lays the foundations for February Analyses

    ucl-pathgenomics/SARS2-ResistanceDB’s past year of commit activity
    0 0 0 0 Updated Nov 9, 2022
  • snippets Public

    Small scripts, functions, pipelines that are of use

    ucl-pathgenomics/snippets’s past year of commit activity
    R 0 MIT 0 0 0 Updated May 20, 2021
  • cmvdrg Public

    !! DEPRECATED !! please visit ojcharles/herpesdrg --------------- Human Cytomegalovirus antiviral Drug Resistance Genotyping

    ucl-pathgenomics/cmvdrg’s past year of commit activity
    R 1 GPL-3.0 3 1 0 Updated Dec 3, 2020
  • PUn-of-HaROLD Public

    Pretty Useful runtime of HaROLD

    ucl-pathgenomics/PUn-of-HaROLD’s past year of commit activity
    Java 0 0 0 0 Updated Nov 26, 2020
  • NucleotideDiversity Public
    ucl-pathgenomics/NucleotideDiversity’s past year of commit activity
    0 MIT 0 0 0 Updated Aug 11, 2020

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