Nextflow-config v1.1.0

CHANGELOG

Added

• Generic resource allocations for outside ucla_cds
• get_absolute_path function to resolve a path relative to the current configu file
• Function for merging publishDir rules
• Check for empty lists
• Function for specific schema validation
• BAM parsing module
• Funtion to update base resource allocation values
• Env setting function
• Function to use CPUs with Docker to circumvent behavior introduced by Nextflow starting in v22.11.0-edge
• Function for resolving pipelines in metapipelines
• Common functions for align-DNA and -RNA
• Option for user to overwrite previously loaded custum types by calling schema.load_custom_types() with argument purge_existing_custom_types=true

Fixed

• BAM parser failing if multiple lines needed to be skipped
• Schema config function load_custom_types() overwriting previously loaded custom types if called multiple times
• workDir parity to handle NXF_WORK setting

Changed

• Modify exceptions to be more specific