Reusable workflows live under .github #1

	---
Check failure on line 1 in .github/workflows/nextflow-tests.yml View workflow run for this annotation GitHub Actions / .github/workflows/nextflow-tests.yml Invalid workflow file `workflow-call` is not a valid event name
	name: 'Nextflow tests'

	on:
	workflow-call:

	# Inspired by https://blog.aspect.dev/github-actions-dynamic-matrix
	jobs:
	discover-tests:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4

	- id: listfiles
	shell: python
	run: \|
	import json
	import os
	from pathlib import Path

	testfiles = [
	str(item) for item in
	Path(".").glob("*/configtest.json")
	]
	with open(os.environ.get("GITHUB_OUTPUT"),
	mode="w", encoding="utf-8") as outfile:
	outfile.write(f"testfiles={json.dumps(testfiles)}\n")

	outputs:
	testfiles: ${{ steps.listfiles.outputs.testfiles }}

	runtests:
	runs-on: ubuntu-latest
	needs: discover-tests

	strategy:
	matrix:
	testfile: ${{ fromJSON(needs.discover-tests.outputs.testfiles) }}

	steps:
	- uses: actions/checkout@v4

	- shell: python
	with:
	image: ghcr.io/uclahs-cds/nextflow-config-test:testing
	run: \|
	import sys
	from pathlib import Path

	from configtest import NextflowConfigTest

	clean = NextflowConfigTest.from_file(
	"${{ matrix.testfile }}"
	).check_results(Path(".").resolve())

	if not clean:
	sys.exit(1)

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