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v474 Genome Browser Software
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@jonathancasper jonathancasper released this 02 Dec 22:01
· 291 commits to master since this release
v474_branch.1
d84be30

This is the v474 release of the UCSC Genome Browser. A summary of the relevant code changes includes:

  • Added setColorWith to allow wiggles to be colored by a bigBed
  • Allow people to select Exit Mult-region on the pop-up box
  • Better error messages if an assembly hub db isn't found for some reason
  • Added a cart rewrite to support moving decipher tracks into a supertrack
  • More work on adding support for non-ASCII characters in hgTracks and PDF
  • Fixed a subtle drawing bug in zoomed-in bigWigs
  • More fixes for hideOthers, make sure that tracks that are on by default are really hidden
  • Hide legend if all gnomad pli tracks are hidden
  • Suppressed unnecessary error log messages due to loading a hic file with an invalid normalization type
  • Add in GENCODE hgc gene and transcript name display in table, as check for HGCN is missing miRNAs not in HGNC but in mirBASE
  • Fixed an issue in loading expRatio data when the number of experiments exceeded the number of exons; such files should now be able to be loaded and processed (e.g. for conversion to bigBed)
  • Making sure that hgGeneGraph is not spawning more and more dot programs
  • Rework the use of /scratch/tmp /data/tmp and /dev/shm temporary filesystems in the automated pipelines to accommodate new cluster machines
  • Fixup security points in the assembly request CGI script that is sending emails
  • hgPhyloPlace: add option for subtree JSON files to persist instead of being cleared after 2 days
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