Skip to content

Commit

Permalink
Merge pull request #294 from umccr/bugfix/roll-back-scratch-space
Browse files Browse the repository at this point in the history
Rollback to using /scratch on dragen tools now that we have tmpdirmin set
  • Loading branch information
alexiswl authored Aug 3, 2024
2 parents d1093a6 + 72bf343 commit a173c00
Show file tree
Hide file tree
Showing 3 changed files with 4 additions and 4 deletions.
4 changes: 2 additions & 2 deletions Dockerfile
Original file line number Diff line number Diff line change
Expand Up @@ -7,8 +7,8 @@ ARG GITHUB_ACTIONS_GROUP_NAME="docker"
ARG GITHUB_ACTIONS_GROUP_ID="121"
ARG CONDA_ENV_NAME="cwl-ica"
ARG YQ_VERSION="v4.35.2"
ARG ICAV2_CLI_VERSION="2.26.0"
ARG ICAV2_PLUGINS_CLI_VERSION="v2.27.0.dev20240627150621"
ARG ICAV2_CLI_VERSION="2.27.0"
ARG ICAV2_PLUGINS_CLI_VERSION="v2.27.1"
ARG ICAV2_PLUGINS_CLI_CONDA_PYTHON_VERSION="3.12"
ARG ICAV2_PLUGINS_CLI_CONDA_ENV_NAME="python3.12"
ARG CWL_UTILS_REPO_PATH="https://github.com/alexiswl/cwl-utils"
Expand Down
2 changes: 1 addition & 1 deletion pyproject.toml
Original file line number Diff line number Diff line change
Expand Up @@ -38,7 +38,7 @@ dependencies = [
"semantic_version >= 2.10.0, < 3",
"verboselogs >= 1.7, < 2",
"websocket_client >= 1.7.0, < 2",
"wrapica >= 2.27.0.dev20240627145713",
"wrapica >= 2.27.1",
"cwltool" # Always the latest version
]

Expand Down
2 changes: 1 addition & 1 deletion src/cwl_ica/utils/globals.py
Original file line number Diff line number Diff line change
Expand Up @@ -199,7 +199,7 @@

ICAV2_DRAGEN_TEMPSPACE_MAPPINGS = {
"v1": "\"/ephemeral/\"",
"v2": "\"/tmp/\""
"v2": "\"/scratch/\""
}

MATCH_RUN_LINE_REGEX_OBJ = re.compile(r"run: (/)?([^/\0]+(/)?)+$")
Expand Down

0 comments on commit a173c00

Please sign in to comment.