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TEST DO NOT ACCEPT - Add CI workflow for testing #6

TEST DO NOT ACCEPT - Add CI workflow for testing

TEST DO NOT ACCEPT - Add CI workflow for testing #6

Workflow file for this run

name: CI Workflow for grdwindinversion
on:
push:
branches:
- main
pull_request:
branches:
- main
jobs:
test:
runs-on: ubuntu-latest
timeout-minutes: 360 # 6 hours limit for the job
steps:
# Checkout the code
- name: Checkout code
uses: actions/checkout@v2
- uses: mamba-org/setup-micromamba@v1
with:
micromamba-version: '1.5.9-1' # any version from https://github.com/mamba-org/micromamba-releases
init-shell: bash
post-cleanup: 'all'
- name: Create environment and install tools
run: micromamba create -n grdwind_env pytest conda-build boa python=3.10 -y
- name: Build package
run: |
cd recipe
eval "$(micromamba shell hook --shell bash)"
micromamba activate grdwind_env
conda mambabuild .
# Install the built package into the environment
- name: Install the built package
run: |
eval "$(micromamba shell hook --shell bash)"
micromamba activate grdwind_env
conda install --use-local grdwindinversion -y
# Cache the test data if previously downloaded (up to 10 GB limit for the cache)
- name: Cache test data
uses: actions/cache@v2
with:
path: ./test_data
key: test-data-v1
restore-keys: test-data-
# Download test data if not already cached
- name: Download test data
if: steps.cache.outputs.cache-hit != 'true' # Only download if cache miss
run: |
mkdir -p ./test_data/
wget https://cloud.ifremer.fr/index.php/s/ExLQ2TnYAqozPWE/download -O /tmp/ecmwf.zip
unzip /tmp/ecmwf.zip -d ./test_data/
wget https://cloud.ifremer.fr/index.php/s/kRgdOOPsjoZieZR/download -O /tmp/l1.zip
unzip /tmp/l1.zip -d ./test_data/
timeout-minutes: 200 # Adjust depending on the size of your data
# Set up xsar configuration
- name: Setup xsar configuration
run: |
mkdir -p ~/.xsar
echo "data_dir: /tmp" > ~/.xsar/config.yaml
echo "auxiliary_dir: ./test_data/auxiliary" >> ~/.xsar/config.yaml
echo "path_dataframe_aux: ./test_data/auxiliary/active_aux.csv" >> ~/.xsar/config.yaml
# Set up grdwindinversion configuration
- name: Setup grdwindinversion configuration
run: |
mkdir -p ~/.grdwindinversion
echo "'ecmwf_0100_1h': ./test_data/ECMWF/forecast/hourly/0100deg/netcdf_light/%Y/%j/ECMWF_FORECAST_0100_%Y%m%d%H%M_10U_10V.nc" > ~/.grdwindinversion/data_config.yaml
#echo "'ecmwf_0125_1h': ./test_data/ECMWF/0.125deg/1h/forecasts/%Y/%j/ecmwf_%Y%m%d%H%M.nc" >> ~/.grdwindinversion/data_config.yaml
#echo "'sarwing_luts_path': './test_data/GMFS/v1.6/'" >> ~/.grdwindinversion/data_config.yaml
#echo "'nc_luts_path': ./test_data/GMFS/nc_luts" >> ~/.grdwindinversion/data_config.yaml
#echo "'lut_cmod7_path': './test_data/GMFS/v1.6/GMF_cmod7_official/cmod7_and_python_script'" >> ~/.grdwindinversion/data_config.yaml
#echo "'lut_ms1ahw_path': './test_data/GMFS/v1.6/GMF_cmodms1ahw'" >> ~/.grdwindinversion/data_config.yaml
# Run the tests
- name: Run tests
run: |
eval "$(micromamba shell hook --shell bash)"
micromamba activate grdwind_env
pytest
# Optionally, upload test artifacts (NetCDF files or logs) if needed
#- name: Upload test artifacts
# if: failure() # Only upload on failure
# uses: actions/upload-artifact@v2
# with:
# name: test-output
# path: ./test_output/