TEST DO NOT ACCEPT - Add CI workflow for testing #6
Workflow file for this run
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name: CI Workflow for grdwindinversion | |
on: | |
push: | |
branches: | |
- main | |
pull_request: | |
branches: | |
- main | |
jobs: | |
test: | |
runs-on: ubuntu-latest | |
timeout-minutes: 360 # 6 hours limit for the job | |
steps: | |
# Checkout the code | |
- name: Checkout code | |
uses: actions/checkout@v2 | |
- uses: mamba-org/setup-micromamba@v1 | |
with: | |
micromamba-version: '1.5.9-1' # any version from https://github.com/mamba-org/micromamba-releases | |
init-shell: bash | |
post-cleanup: 'all' | |
- name: Create environment and install tools | |
run: micromamba create -n grdwind_env pytest conda-build boa python=3.10 -y | |
- name: Build package | |
run: | | |
cd recipe | |
eval "$(micromamba shell hook --shell bash)" | |
micromamba activate grdwind_env | |
conda mambabuild . | |
# Install the built package into the environment | |
- name: Install the built package | |
run: | | |
eval "$(micromamba shell hook --shell bash)" | |
micromamba activate grdwind_env | |
conda install --use-local grdwindinversion -y | |
# Cache the test data if previously downloaded (up to 10 GB limit for the cache) | |
- name: Cache test data | |
uses: actions/cache@v2 | |
with: | |
path: ./test_data | |
key: test-data-v1 | |
restore-keys: test-data- | |
# Download test data if not already cached | |
- name: Download test data | |
if: steps.cache.outputs.cache-hit != 'true' # Only download if cache miss | |
run: | | |
mkdir -p ./test_data/ | |
wget https://cloud.ifremer.fr/index.php/s/ExLQ2TnYAqozPWE/download -O /tmp/ecmwf.zip | |
unzip /tmp/ecmwf.zip -d ./test_data/ | |
wget https://cloud.ifremer.fr/index.php/s/kRgdOOPsjoZieZR/download -O /tmp/l1.zip | |
unzip /tmp/l1.zip -d ./test_data/ | |
timeout-minutes: 200 # Adjust depending on the size of your data | |
# Set up xsar configuration | |
- name: Setup xsar configuration | |
run: | | |
mkdir -p ~/.xsar | |
echo "data_dir: /tmp" > ~/.xsar/config.yaml | |
echo "auxiliary_dir: ./test_data/auxiliary" >> ~/.xsar/config.yaml | |
echo "path_dataframe_aux: ./test_data/auxiliary/active_aux.csv" >> ~/.xsar/config.yaml | |
# Set up grdwindinversion configuration | |
- name: Setup grdwindinversion configuration | |
run: | | |
mkdir -p ~/.grdwindinversion | |
echo "'ecmwf_0100_1h': ./test_data/ECMWF/forecast/hourly/0100deg/netcdf_light/%Y/%j/ECMWF_FORECAST_0100_%Y%m%d%H%M_10U_10V.nc" > ~/.grdwindinversion/data_config.yaml | |
#echo "'ecmwf_0125_1h': ./test_data/ECMWF/0.125deg/1h/forecasts/%Y/%j/ecmwf_%Y%m%d%H%M.nc" >> ~/.grdwindinversion/data_config.yaml | |
#echo "'sarwing_luts_path': './test_data/GMFS/v1.6/'" >> ~/.grdwindinversion/data_config.yaml | |
#echo "'nc_luts_path': ./test_data/GMFS/nc_luts" >> ~/.grdwindinversion/data_config.yaml | |
#echo "'lut_cmod7_path': './test_data/GMFS/v1.6/GMF_cmod7_official/cmod7_and_python_script'" >> ~/.grdwindinversion/data_config.yaml | |
#echo "'lut_ms1ahw_path': './test_data/GMFS/v1.6/GMF_cmodms1ahw'" >> ~/.grdwindinversion/data_config.yaml | |
# Run the tests | |
- name: Run tests | |
run: | | |
eval "$(micromamba shell hook --shell bash)" | |
micromamba activate grdwind_env | |
pytest | |
# Optionally, upload test artifacts (NetCDF files or logs) if needed | |
#- name: Upload test artifacts | |
# if: failure() # Only upload on failure | |
# uses: actions/upload-artifact@v2 | |
# with: | |
# name: test-output | |
# path: ./test_output/ |