feat: add first functions for PubChem tool #66
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| name: Test, Deploy, and Verify | |
| on: | |
| pull_request: | |
| types: [opened, reopened, synchronize] | |
| pull_request_target: | |
| types: [labeled, synchronize] | |
| push: | |
| branches: | |
| - main | |
| - "**" | |
| workflow_dispatch: | |
| jobs: | |
| check_and_run: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| ref: ${{ github.event.pull_request.head.sha }} | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.12 | |
| - name: Install uv | |
| run: pip install uv | |
| - name: Create virtual environment and install dependencies | |
| run: | | |
| uv venv | |
| . .venv/bin/activate | |
| uv pip install -e ".[dev]" | |
| - name: Check for 'safe to deploy' label | |
| id: check_label | |
| run: | | |
| echo "Event name: ${{ github.event_name }}" | |
| echo "Event action: ${{ github.event.action }}" | |
| if [[ "${{ github.event_name }}" == "pull_request_target" ]]; then | |
| if [[ ${{ contains(github.event.pull_request.labels.*.name, 'safe to deploy') }} == 'true' ]]; then | |
| echo "safe_to_deploy=true" >> $GITHUB_OUTPUT | |
| else | |
| echo "safe_to_deploy=false" >> $GITHUB_OUTPUT | |
| fi | |
| else | |
| echo "safe_to_deploy=true" >> $GITHUB_OUTPUT | |
| fi | |
| - name: Run pre-deployment tests | |
| if: steps.check_label.outputs.safe_to_deploy == 'true' | |
| run: | | |
| . .venv/bin/activate | |
| pytest tests --ignore=tests/test_modal.py | |
| - name: Check for Modal secrets | |
| id: check_secrets | |
| if: steps.check_label.outputs.safe_to_deploy == 'true' | |
| run: | | |
| if [ -z "${{ secrets.MODAL_TOKEN_ID }}" ] || [ -z "${{ secrets.MODAL_TOKEN_SECRET }}" ]; then | |
| echo "modal_secrets_set=false" >> $GITHUB_OUTPUT | |
| else | |
| echo "modal_secrets_set=true" >> $GITHUB_OUTPUT | |
| fi | |
| - name: Deploy to dev | |
| if: | | |
| steps.check_label.outputs.safe_to_deploy == 'true' && | |
| steps.check_secrets.outputs.modal_secrets_set == 'true' | |
| env: | |
| MODAL_TOKEN_ID: ${{ secrets.MODAL_TOKEN_ID }} | |
| MODAL_TOKEN_SECRET: ${{ secrets.MODAL_TOKEN_SECRET }} | |
| run: | | |
| . .venv/bin/activate | |
| chemenv deploy | |
| - name: Run post-deployment tests | |
| if: | | |
| steps.check_label.outputs.safe_to_deploy == 'true' && | |
| steps.check_secrets.outputs.modal_secrets_set == 'true' | |
| env: | |
| MODAL_TOKEN_ID: ${{ secrets.MODAL_TOKEN_ID }} | |
| MODAL_TOKEN_SECRET: ${{ secrets.MODAL_TOKEN_SECRET }} | |
| run: | | |
| . .venv/bin/activate | |
| pytest tests/test_modal.py | |
| - name: Workflow summary | |
| run: | | |
| echo "Workflow Summary:" | |
| echo "Safe to deploy: ${{ steps.check_label.outputs.safe_to_deploy }}" | |
| echo "Modal secrets set: ${{ steps.check_secrets.outputs.modal_secrets_set }}" | |
| if [ "${{ steps.check_label.outputs.safe_to_deploy }}" != "true" ]; then | |
| echo "The 'safe to deploy' label is not present on this pull request." | |
| fi | |
| if [ "${{ steps.check_secrets.outputs.modal_secrets_set }}" != "true" ]; then | |
| echo "Modal secrets are not properly set." | |
| fi |