Add conf for gxit rstudio_askor

usegalaxy-eu · Nov 15, 2024 · f2992a4 · f2992a4
1 parent f0ecce8
commit f2992a4
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Showing 3 changed files with 18 additions and 9 deletions.
diff --git a/files/galaxy-test/tpv/interactive_tools.yml b/files/galaxy-test/tpv/interactive_tools.yml
@@ -124,6 +124,10 @@ tools:
     inherits: interactive_tool
     cores: 2
     mem: 8
+  interactive_tool_rstudio_askor:
+    inherits: interactive_tool
+    cores: 2
+    mem: 8
   interactive_tool_pyiron:
     inherits: interactive_tool
     cores: 1

diff --git a/files/galaxy/tpv/interactive_tools.yml b/files/galaxy/tpv/interactive_tools.yml
@@ -232,6 +232,10 @@ tools:
     inherits: interactive_tool
     cores: 2
     mem: 8
+  interactive_tool_rstudio_askor:
+    inherits: interactive_tool
+    cores: 2
+    mem: 8
   interactive_tool_pyiron:
     inherits: interactive_tool
     cores: 1

diff --git a/templates/galaxy/config/tool_conf.xml.j2 b/templates/galaxy/config/tool_conf.xml.j2
@@ -294,7 +294,7 @@
   </section>
   <section id="single-cell-section-cell-spatial" name="Spatial">
   </section>
-  <section id="spatial_omics" name="Spatial Omics" />  
+  <section id="spatial_omics" name="Spatial Omics" />
   <!-- HCA Single Cell tools -->
   <section id="hca_sc_get-scrna" name="Get scRNAseq data">
   </section>
@@ -391,6 +391,7 @@
     <tool file="interactive/interactivetool_cellxgene.xml" />
     <tool file="interactive/interactivetool_cellxgene_1.1.1.xml" />
     <tool file="interactive/interactivetool_isee.xml" />
+    <tool file="interactive/interactivetool_rstudio_askor.xml" />
   </section>
   <label id="single-cell-label-automated-cell-annotation" text="Automated cell annotation" />
   <section id="hca_sc_scmap_tools" name="SCMap">
@@ -505,9 +506,9 @@
     <tool file="/opt/galaxy/custom-tools/test/lfoldz/rnalfoldz.xml" />
 
     <!--tool file="/opt/galaxy/custom-tools/test/chem/transfs.xml" hidden="True" /-->
-	  
+
     <tool file="/opt/galaxy/custom-tools/jbrowse2/jbrowse2.xml" hidden="True"/>
-	  
+
     <tool file="/opt/galaxy/custom-tools/test/imaging/he_maldi_image_registration/he_maldi_image_registration.xml" hidden="True" />
     <!--tool file="/opt/galaxy/custom-tools/test/imaging/overlay_moving_and_fixed_image/overlay_moving_and_fixed_image.xml" />
     <tool file="/opt/galaxy/custom-tools/test/imaging/projective_transformation/projective_transformation.xml" />
@@ -521,7 +522,7 @@
   </section>
   <section id="animal_detection_on_acoustic_recordings" name="Animal Detection on Acoustic Recordings" />
   <section id="compute_indicators_for_satellite_remote_sensing" name="Compute indicators for satellite remote sensing" />
-  
+
   <section id="regional_variation" name="Regional Variation" >
   </section>
   <section id="genome_diversity" name="Genome Diversity" >
@@ -551,7 +552,7 @@
   <section id="interactivetools" name="Interactive tools">
         <tool file="interactive/interactivetool_source.xml" />
         <tool file="interactive/interactivetool_napari.xml" />
-        <tool file="interactive/interactivetool_cellprofiler.xml" /> 
+        <tool file="interactive/interactivetool_cellprofiler.xml" />
         <tool file="interactive/interactivetool_tadviewer.xml" />
         <tool file="interactive/interactivetool_qgis.xml" />
         <tool file="interactive/interactivetool_qupath.xml" />
@@ -577,14 +578,14 @@
         <tool file="interactive/interactivetool_rstudio.xml" />
         <tool file="interactive/interactivetool_rstudio_0_3.xml" />
         <tool file="interactive/interactivetool_pyiron.xml" />
-        <tool file="interactive/interactivetool_higlass.xml" /> 
+        <tool file="interactive/interactivetool_higlass.xml" />
         <tool file="interactive/interactivetool_openrefine.xml" />
         <tool file="interactive/interactivetool_panoply.xml" />
         <tool file="interactive/interactivetool_askomics.xml" />
         <tool file="interactive/interactivetool_cellxgene.xml" />
         <tool file="interactive/interactivetool_cellxgene_1.1.1.xml" />
         <tool file="interactive/interactivetool_bam_iobio.xml" />
-        <tool file="interactive/interactivetool_vcf_iobio.xml" />	
+        <tool file="interactive/interactivetool_vcf_iobio.xml" />
         <tool file="interactive/interactivetool_neo4j.xml" />
         <tool file="interactive/interactivetool_phinch.xml" />
         <tool file="interactive/interactivetool_paraview.xml" />
@@ -621,7 +622,7 @@
   </section>
 
 <!-- Earth-system subdomain -->
-  <label id="earth-system-label-interactive-tools" text="General interactive tools" />  
+  <label id="earth-system-label-interactive-tools" text="General interactive tools" />
   <section id="earth-system-section-interactivetools" name="Interactive tools">
     <tool file="interactive/interactivetool_jupyter_notebook.xml" />
     <tool file="interactive/interactivetool_jupyter_notebook_1.0.0.xml" />
@@ -630,7 +631,7 @@
     <tool file="interactive/interactivetool_climate_notebook.xml" />
     <tool file="interactive/interactivetool_pangeo_notebook.xml" />
     <tool file="interactive/interactivetool_pangeo_ml_notebook.xml" />
-    <tool file="interactive/interactivetool_holoviz.xml" />  
+    <tool file="interactive/interactivetool_holoviz.xml" />
     <tool file="interactive/interactivetool_copernicus.xml" />
     <tool file="interactive/interactivetool_panoply.xml" />
     <tool file="interactive/interactivetool_stac.xml" />