Adding tpv variable for cooler_cload_tabix tool

[SaimMomin12]

No description provided.

[bgruening]

@sanjaysrikakulam ORG has this change in the default tool. https://github.com/galaxyproject/usegalaxy-playbook/blob/08336fc92f658dd34714f6d8408d02c56502c905/env/common/templates/galaxy/config/tpv/defaults.yaml.j2#L28

I think we should do similar... What do you think.
We need this pr urgently for a collaboration and a failing tool. But a general solution would be nice

[bgruening]

See line 390/395 @SaimMomin12

[SaimMomin12]

@bgruening Should this be updated in the following way?

env: 
    - HDF5_USE_FILE_LOCKING: "FALSE"

[sanjaysrikakulam]

@sanjaysrikakulam ORG has this change in the default tool. https://github.com/galaxyproject/usegalaxy-playbook/blob/08336fc92f658dd34714f6d8408d02c56502c905/env/common/templates/galaxy/config/tpv/defaults.yaml.j2#L28

I think we should do similar... What do you think. We need this pr urgently for a collaboration and a failing tool. But a general solution would be nice

Yes, setting it in the tool default is fine, I think (I did not find it set to True anywhere in the ORG's confs). I have pushed a new commit adding the ENV HDF5_USE_FILE_LOCKING: "False" to tool default and removed the tool-specific setting and the tool entry since the tool does not have any exclusive requirements. Feel free to merge and deploy.

[bgruening]

@sanjaysrikakulam wants to go all in - nice. Please feel free to merge and redeploy. Can you let @SaimMomin12 know when it was restarted?

[sanjaysrikakulam]

@SaimMomin12, the config is deployed. Please test.

[SaimMomin12]

@sanjaysrikakulam thanks for the quick patch, I will test the tool and let you know :)

Edit: The issue has been resolved and the tool works fine now!