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Merge pull request #693 from vaccineontology/release-20240320
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make release 20240320
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@zhengj2007
zhengj2007 authored Mar 20, 2024
2 parents 8261d6a + 321d73d commit 13f386b
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67 changes: 37 additions & 30 deletions CVO/cvo.owl
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xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
xmlns:ncbitaxon="http://purl.obolibrary.org/obo/ncbitaxon#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/vo/cvo.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/vo/releases/2024-02-07/cvo.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/vo/releases/2024-03-20/cvo.owl"/>
<protege:defaultLanguage>en</protege:defaultLanguage>
<dc:contributor>Chris mungall</dc:contributor>
<dc:contributor>Erica Marcos</dc:contributor>
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<dc:subject xml:lang="en">An ontology in the domain of vaccine and vaccination</dc:subject>
<dc:title xml:lang="en">Vaccine Ontology</dc:title>
<terms:license rdf:resource="http://creativecommons.org/licenses/by/4.0/"/>
<owl:versionInfo>2024-02-07</owl:versionInfo>
<owl:versionInfo>2024-03-20</owl:versionInfo>
</owl:Ontology>


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<!-- http://purl.obolibrary.org/obo/IAO_0000233 -->

<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000233"/>
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000233">
<obo:IAO_0000111 xml:lang="en">term tracker item</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">the URI for an OBI Terms ticket at sourceforge, such as https://sourceforge.net/p/obi/obi-terms/772/</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">An IRI or similar locator for a request or discussion of an ontology term.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Person: Jie Zheng, Chris Stoeckert, Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">Person: Jie Zheng, Chris Stoeckert, Alan Ruttenberg</obo:IAO_0000119>
<rdfs:comment xml:lang="en">The &apos;tracker item&apos; can associate a tracker with a specific ontology term.</rdfs:comment>
<rdfs:label xml:lang="en">term tracker item</rdfs:label>
</owl:AnnotationProperty>



<!-- http://purl.obolibrary.org/obo/IAO_0000234 -->

<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000234"/>
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000234">
<obo:IAO_0000111 xml:lang="en">ontology term requester</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">The name of the person, project, or organization that motivated inclusion of an ontology term by requesting its addition.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Person: Jie Zheng, Chris Stoeckert, Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">Person: Jie Zheng, Chris Stoeckert, Alan Ruttenberg</obo:IAO_0000119>
<rdfs:comment>The &apos;term requester&apos; can credit the person, organization or project who request the ontology term.</rdfs:comment>
<rdfs:label xml:lang="en">ontology term requester</rdfs:label>
</owl:AnnotationProperty>



Expand Down Expand Up @@ -379,7 +396,11 @@ https://sourceforge.net/tracker/?func=detail&amp;aid=3603413&amp;group_id=177891

<!-- http://purl.obolibrary.org/obo/OGG_0000000006 -->

<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/OGG_0000000006"/>
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/OGG_0000000006">
<obo:IAO_0000115>A GeneID in the NCBI Gene database </obo:IAO_0000115>
<obo:IAO_0000117>Oliver He, Yue Liu</obo:IAO_0000117>
<rdfs:label xml:lang="en">NCBI GeneID</rdfs:label>
</owl:AnnotationProperty>



Expand Down Expand Up @@ -6047,17 +6068,6 @@ https://sourceforge.net/p/obi/obi-terms/738/</obo:IAO_0000116>
<!-- http://purl.obolibrary.org/obo/VO_0000179 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/VO_0000179">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000040"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/VO_0000001"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<rdfs:subClassOf>
<owl:Restriction>
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/VO_0000623">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/VO_0000615"/>
<obo:IAO_0000115>a vaccine role that indicates the vaccine being a DNA vaccine. </obo:IAO_0000115>
<obo:IAO_0000115>A vaccine role that indicates the vaccine being a DNA vaccine. </obo:IAO_0000115>
<obo:IAO_0000117>YH</obo:IAO_0000117>
<oboInOwl:inSubset>role</oboInOwl:inSubset>
<rdfs:label>DNA vaccine role</rdfs:label>
Expand All @@ -6704,7 +6714,7 @@ https://sourceforge.net/p/obi/obi-terms/738/</obo:IAO_0000116>

<owl:Class rdf:about="http://purl.obolibrary.org/obo/VO_0000624">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/VO_0000615"/>
<obo:IAO_0000115>a vaccine role that indicates the vaccine being a subunit vaccine. </obo:IAO_0000115>
<obo:IAO_0000115>A vaccine role that indicates the vaccine being a subunit vaccine. </obo:IAO_0000115>
<obo:IAO_0000117>YH</obo:IAO_0000117>
<oboInOwl:inSubset>role</oboInOwl:inSubset>
<rdfs:label>subunit vaccine role</rdfs:label>
Expand All @@ -6716,7 +6726,7 @@ https://sourceforge.net/p/obi/obi-terms/738/</obo:IAO_0000116>

<owl:Class rdf:about="http://purl.obolibrary.org/obo/VO_0000636">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/VO_0000615"/>
<obo:IAO_0000115>a vaccine role that indicates the vaccine being a recombinant vector vaccine. </obo:IAO_0000115>
<obo:IAO_0000115>A vaccine role that indicates the vaccine being a recombinant vector vaccine. </obo:IAO_0000115>
<obo:IAO_0000117>YH</obo:IAO_0000117>
<oboInOwl:inSubset>role</oboInOwl:inSubset>
<rdfs:label>recombinant vector vaccine role</rdfs:label>
Expand Down Expand Up @@ -9603,12 +9613,6 @@ However, running the reasoner takes time. As a way to reducing the time, I have
</owl:Restriction>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/VO_0000001"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/VO_0003355"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0100026"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/VO_0003355"/>
Expand All @@ -9625,7 +9629,7 @@ However, running the reasoner takes time. As a way to reducing the time, I have
</owl:someValuesFrom>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000115>a grouping class for vaccines for specific pathogens</obo:IAO_0000115>
<obo:IAO_0000115>A grouping class for vaccines for specific pathogens.</obo:IAO_0000115>
<oboInOwl:inSubset>vaccine</oboInOwl:inSubset>
<rdfs:label>vaccine for pathogen</rdfs:label>
</owl:Class>
Expand All @@ -9647,7 +9651,8 @@ However, running the reasoner takes time. As a way to reducing the time, I have

<owl:Class rdf:about="http://purl.obolibrary.org/obo/VO_0005506">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OGG_0000000002"/>
<obo:IAO_0000115>A gene that expresses a protein, either part of or the whole of which is the antigen within a specific cancer vaccine.</obo:IAO_0000115>
<obo:IAO_0000115>A gene expressing a protein, either partially or entirely, serving as the antigen within a specific cancer vaccine.</obo:IAO_0000115>
<obo:IAO_0000117> Anna Maria Masci</obo:IAO_0000117>
<obo:IAO_0000117>Yongqun He</obo:IAO_0000117>
<obo:IAO_0000233>https://github.com/vaccineontology/VO/issues/677</obo:IAO_0000233>
<oboInOwl:inSubset>gene</oboInOwl:inSubset>
Expand Down Expand Up @@ -32499,8 +32504,9 @@ Immunization Route: Intramuscular injection (i.m.)</obo:IAO_0000115>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/DOID_162"/>
<obo:IAO_0000115>A cancer that is caused by human papillomavirus (HPV) infection. HPV infection can lead to six types of cancer including anal cancer, cervical cancer, oropharyngeal cancer, penile cancer, vaginal cancer, and vulvar cancer.</obo:IAO_0000115>
<obo:IAO_0000115>A cancer that is caused by human papillomavirus (HPV) infection. HPV infection can lead to six types of cancer including anal, cervical, oropharyngeal, penile, vaginal, and vulvar cancer.</obo:IAO_0000115>
<obo:IAO_0000116>placeholder, will send new term requst to DOID</obo:IAO_0000116>
<obo:IAO_0000117> Anna Maria Masci</obo:IAO_0000117>
<obo:IAO_0000117> Xingxian Li</obo:IAO_0000117>
<obo:IAO_0000117>Jie Zheng</obo:IAO_0000117>
<obo:IAO_0000233>https://github.com/vaccineontology/VO/issues/677</obo:IAO_0000233>
Expand All @@ -32527,7 +32533,8 @@ Immunization Route: Intramuscular injection (i.m.)</obo:IAO_0000115>

<owl:Class rdf:about="http://purl.obolibrary.org/obo/VO_0007655">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_1110034"/>
<obo:IAO_0000115>An antigen that is expressed by the tumor cells. The antigen could be only present on the tumor cells or overexpressed on the tumor cells.</obo:IAO_0000115>
<obo:IAO_0000115>An antigen expressed by the tumor cells, which may be exclusively present on tumor cells or overexpressed on them.</obo:IAO_0000115>
<obo:IAO_0000117> Anna Maria Masci</obo:IAO_0000117>
<obo:IAO_0000117>Jie Zheng</obo:IAO_0000117>
<obo:IAO_0000233>https://github.com/vaccineontology/VO/issues/677</obo:IAO_0000233>
<oboInOwl:inSubset>material entity</oboInOwl:inSubset>
Expand Down Expand Up @@ -32566,7 +32573,7 @@ Immunization Route: Intramuscular injection (i.m.)</obo:IAO_0000115>
</owl:Restriction>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/VO_0000177"/>
<obo:IAO_0000115>A cancer vaccine that aims to kill or control tumor cells by recognizing the tumor cells and stimulating the immune system via tumor antigens.</obo:IAO_0000115>
<obo:IAO_0000115>A cancer vaccine that aims to eliminate or control tumor cells by recognizing the tumor cells and stimulating the immune system via tumor antigens.</obo:IAO_0000115>
<obo:IAO_0000117>Anna Maria Masci</obo:IAO_0000117>
<obo:IAO_0000117>Jie Zheng</obo:IAO_0000117>
<obo:IAO_0000117>Oliver He</obo:IAO_0000117>
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