Fix OpenMP issue with GCC 8.5

veg · Nov 13, 2023 · a00a7c8 · a00a7c8
1 parent 9493454
commit a00a7c8
Showing 1 changed file with 3 additions and 1 deletion.
diff --git a/Dockerfile b/Dockerfile
@@ -3,4 +3,6 @@ FROM oraclelinux:8
 
 # Set up environment and install dependencies
 RUN yum -y check-update ; yum -y update && \
-    yum install -y cmake gcc-c++ git make
+    yum install -y cmake gcc-c++ git make && \
+    sed -i 's/shared(currently_defined_clusters, try_cluster, sequence_lengths, current_sequence, current_clusters, firstSequenceLength, min_overlap)/shared(currently_defined_clusters, try_cluster, sequence_lengths, current_sequence, current_clusters)/g' src/read_reducer.cpp && \
+    sed -i 's/shared(my_distance_estimate,nodeParents,workingNodes,distanceEstimates, step_penalty, min_overlap, resolutionOption, firstSequenceLength, theSequence, left_to_do)/shared(my_distance_estimate,nodeParents,workingNodes,distanceEstimates)/g' src/ShortestPathTN93.cpp && \