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vg v1.11.0 - Cairano
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@jeizenga jeizenga released this 08 Oct 20:23
· 10077 commits to master since this release
v1.11.0
ea4aade
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Docker image quay.io/vgteam/vg:v1.11.0-0-gea4aaded-t238-run

This release includes:

  • Added functionality in vg surject to preserve long insertions or deletions.
  • Added parsing of symbolic variant representation from VCF (INV, CNV, etc.) in vg construct.
  • Added population-based MAPQ adjustment in vg mpmap.
  • Improvements to the robustness of vg add.
  • Added an index into vg index for computing distances.
  • Corrections to the online documentation.
  • Support for clang compilation.
  • Bugfixes in vg construct that led to invalid GBWT indexes.
  • Bugfix in make clean's cleaning of some dependencies.
  • Bugfix in vg genotype on low-coverage samples.
  • Harmonized the BGZF usage in GAM files across the code base.
  • Improved the functionality of graph normalization.
  • Speed up deserialization of snarls.
  • Stabilize the representation of snarls and chains with respect to orientation.
  • Optimized GBWT construction for massive VCFs.

New System Dependencies

None

New and Updated Submodules

The following submodules have been updated: gfakluge, vcflib, gbwt, and gcsa2.

Assets 3
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