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vg 1.14.0 - Quadrelle
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@jeizenga jeizenga released this 19 Feb 19:50
· 9414 commits to master since this release
v1.14.0
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Download for Linux

Don't forget to mark the static binary executable:

chmod +x vg

Docker Image: quay.io/vgteam/vg:v1.14.0

Buildable Source Tarball: vg-v1.14.0.tar.gz

Includes source for vg and all submodules. Use this instead of Github's "Source Code" downloads; those will not build as they do not include code for bundled dependencies that the vg build process needs.

This release includes:

  • A minimizer index can now be build with vg minimizer.
  • vg surject now performs forced full-length alignments by default instead of with a command line flag.
  • Better logic for marking properly paired reads in vg surject.
  • Bug fix in VCF parsing for graph construction
  • Improved accuracy of vg call on deletions.
  • Fix a bug in vg call that caused crashes on some graph topologies.
  • Fix a bug in vg chunk that would produce graph chunks that were inappropriate for variant calling.
  • Improved selection of sites where vg call should call variants.
  • Improved serialization that can encapsulate multiple indexes and recognize mismatched Protobuf file types.
  • Fix help documentation error in vg index.
  • Lighter weight graph implementations for improved memory efficiency.
  • Improved speed in vg mpmap on graphs with tight cycles.
  • Improved alignment performance in vg mpmap's anchoring heuristics.
  • Improved speed on some embedded path manipulations.
  • Additional GAM filtering options in vg filter.
  • More semantically consistent behavior when trying to use haplotypes to score mappings with unphased variants.
  • vg msga can be directed to align specific regions.
  • Bug fixes in vg validate and vg mod
  • Source tar balls now properly document the VG version used.

New System Dependencies

None

New and Updated Submodules

The structures submodule has been updated. Make sure to git submodule update to get it if building from source.

Assets 4
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