Modify Dockerfile to build image based on released PACMENSL versions.

docker/Dockerfile

@@ -1,6 +1,8 @@
 FROM ubuntu:latest
 MAINTAINER Huy Duc Vo
 
+ARG pacmensl_version=0.1.0
+
 RUN echo 'debconf debconf/frontend select Noninteractive' | debconf-set-selections
 
 RUN apt-get update && \
@@ -9,7 +11,8 @@ RUN apt-get update && \
 RUN apt-get -y install dialog apt-utils
 
 # set environment variables
-ENV USERNAME huy
+ENV USERNAME user
+ENV PACMENSL_VERSION $pacmensl_version
 
 RUN adduser --disabled-password --gecos --create-home ${USERNAME}
 RUN adduser ${USERNAME} sudo
@@ -41,7 +44,6 @@ ENV PACKAGES="\
 
 RUN sudo apt-get install -y ${PACKAGES} && sudo apt-get clean
 
-
 RUN sudo echo "export LD_LIBRARY_PATH=/usr/local/lib" >> /home/${USERNAME}/.bashrc && \
     mkdir /home/${USERNAME}/software && \
     mkdir /home/${USERNAME}/software/src && \
@@ -74,3 +76,27 @@ RUN sudo chmod +x ./install_conda.sh && ./install_conda.sh  \
     && \
     conda update conda && \
     conda init bash
+
+# install petsc
+COPY install_scripts/install_petsc.sh ./
+RUN sudo chmod +x ./install_petsc.sh && ./install_petsc.sh
+
+## install sundials
+COPY install_scripts/install_sundials.sh ./
+ENV PETSC_DIR=/home/${USERNAME}/software/install/petsc
+ENV PETSC_ARCH=linux-c-opt
+RUN sudo chmod +x ./install_sundials.sh && ./install_sundials.sh
+
+# install pacmensl
+COPY install_scripts/install_pacmensl.sh ./
+ENV CPATH=/home/${USERNAME}/software/install/include
+ENV LIBRARY_PATH=/home/${USERNAME}/software/install/lib
+RUN sudo chmod +x ./install_pacmensl.sh && ./install_pacmensl.sh
+
+# Set OMPI environment variable to prevent spurious printing, see issue 4948 openmpi github page
+ENV OMPI_MCA_btl_vader_single_copy_mechanism=none
+
+# Cleanup
+RUN sudo rm *.sh && \
+    sudo rm -rf /home/${USERNAME}/software/build && \
+    sudo rm -rf /home/${USERNAME}/software/src

docker/build_docker_image.sh

@@ -0,0 +1,4 @@
+PACMENSL_VERSION=0.1.0
+ARCH=$(uname -m)
+
+docker build -t pacmensl:v${PACMENSL_VERSION}_${ARCH} --build-arg pacmensl_version=$PACMENSL_VERSION .

docker/install_scripts/install_pacmensl.sh

@@ -4,7 +4,10 @@ user=${USERNAME}
 export CPATH=${CPATH};/home/${user}/software/install/include
 
 cd /home/${user}/software/src
-git clone https://github.com/voduchuy/pacmensl pacmensl
+wget https://github.com/voduchuy/pacmensl/archive/refs/tags/v${PACMENSL_VERSION}.tar.gz -O pacmensl.tar.gz
+tar -xf pacmensl.tar.gz
+rm *.tar.gz
+mv pacmensl* pacmensl
 
 cd /home/${user}/software/build
 mkdir pacmensl
@@ -14,7 +17,4 @@ cmake -DCMAKE_BUILD_TYPE=Release -DBUILD_SHARED_LIBS=ON -DCMAKE_POSITION_INDPEND
 make -j4
 
 # Now install
-make install
-
-# Cleanup all redundant dependencies
-rm -rf /home/${user}/software/src
+make install