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@waldronlab

Waldron Lab at the CUNY SPH

Software and educational materials from the Waldron lab for computational biostatistics at the CUNY SPH in New York City

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  1. MultiAssayExperiment MultiAssayExperiment Public

    Bioconductor package for management of multi-assay data

    R 71 34

  2. curatedMetagenomicData curatedMetagenomicData Public

    Curated Metagenomic Data of the Human Microbiome

    R 130 31

  3. curatedTCGAData curatedTCGAData Public

    Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects

    R 44 8

  4. cBioPortalData cBioPortalData Public

    Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment

    R 33 13

  5. presentations presentations Public

    A repository for public presentations

    TeX 6 10

  6. BugSigDB BugSigDB Public

    A microbial signatures database

    JavaScript 7 7

Repositories

Showing 10 of 107 repositories
  • BugSigDBExports Public

    BugSigDB data files

    waldronlab/BugSigDBExports’s past year of commit activity
    R 1 3 5 0 Updated Feb 12, 2025
  • BugSigDBStats Public

    BugSigDB Stats and Analysis

    waldronlab/BugSigDBStats’s past year of commit activity
    HTML 1 4 4 0 Updated Feb 12, 2025
  • cBioPortalData Public

    Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment

    waldronlab/cBioPortalData’s past year of commit activity
    R 33 13 5 0 Updated Feb 11, 2025
  • utils Public

    Misc. scripts for assorted tasks

    waldronlab/utils’s past year of commit activity
    Shell 1 0 0 0 Updated Feb 11, 2025
  • XeniumIO Public

    software for importing 10X Xenium data

    waldronlab/XeniumIO’s past year of commit activity
    R 0 0 0 0 Updated Feb 11, 2025
  • VisiumIO Public

    Import spaceranger output and 10X spatial data

    waldronlab/VisiumIO’s past year of commit activity
    R 0 0 1 0 Updated Feb 11, 2025
  • curatedMetagenomicData Public

    Curated Metagenomic Data of the Human Microbiome

    waldronlab/curatedMetagenomicData’s past year of commit activity
    R 130 Artistic-2.0 31 12 2 Updated Feb 8, 2025
  • curatedMetagenomicDataCuration Public

    Sample Metadata Curation for curatedMetagenomicData

    waldronlab/curatedMetagenomicDataCuration’s past year of commit activity
    R 28 24 16 (1 issue needs help) 1 Updated Feb 8, 2025
  • MultiAssayExperiment Public

    Bioconductor package for management of multi-assay data

    waldronlab/MultiAssayExperiment’s past year of commit activity
    R 71 34 3 2 Updated Feb 7, 2025
  • bioconductor Public template

    Helper script for bioconductor/bioconductor_docker

    waldronlab/bioconductor’s past year of commit activity
    Shell 9 5 0 0 Updated Feb 7, 2025
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