Update r.yml #69
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| # This workflow uses actions that are not certified by GitHub. | |
| # They are provided by a third-party and are governed by | |
| # separate terms of service, privacy policy, and support | |
| # documentation. | |
| # | |
| # See https://github.com/r-lib/actions/tree/master/examples#readme for | |
| # additional example workflows available for the R community. | |
| # This workflow uses actions that are not certified by GitHub. | |
| # They are provided by a third-party and are governed by | |
| # separate terms of service, privacy policy, and support | |
| # documentation. | |
| # | |
| # See https://github.com/r-lib/actions/tree/master/examples#readme for | |
| # additional example workflows available for the R community. | |
| name: R | |
| on: | |
| push: | |
| branches: [ "master" ] | |
| pull_request: | |
| branches: [ "master" ] | |
| permissions: | |
| contents: read | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ${{ matrix.config.os }} | |
| strategy: | |
| matrix: | |
| config: | |
| - { os: ubuntu-22.04, r: 'devel' } | |
| - { os: ubuntu-22.04, r: 'release' } | |
| - { os: macOS-latest, r: 'next' } | |
| - { os: windows-latest, r: 'release' } | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v3 | |
| # Use the latest version of setup-r that includes the fix for pkgconf | |
| - name: Set up R (latest version) | |
| uses: r-lib/actions/[email protected] | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| # Install system dependencies for Ubuntu | |
| - name: Install system dependencies (Ubuntu) | |
| if: startsWith(matrix.config.os, 'ubuntu') | |
| run: | | |
| sudo apt-get update -y | |
| sudo apt-get install -y pandoc | |
| - name: Suppress Transition Warnings | |
| if: startsWith(matrix.config.os, 'ubuntu') | |
| run: echo "Suppressing Ubuntu transition warnings" | |
| # Debug Installed Tools for Ubuntu | |
| - name: Debug Installed Tools (Ubuntu) | |
| if: startsWith(matrix.config.os, 'ubuntu') | |
| run: | | |
| echo "R version:" | |
| Rscript -e "R.version" | |
| echo "Checking pkg-config installation:" | |
| which pkg-config || echo 'pkg-config not found' | |
| pkg-config --version || echo 'pkg-config version issue' | |
| # Install system dependencies for macOS | |
| - name: Install system dependencies (macOS) | |
| if: matrix.config.os == 'macOS-latest' | |
| run: | | |
| brew update | |
| brew install pandoc | |
| echo "pkgconf version:" | |
| pkg-config --version | |
| # Debug Installed Tools for macOS | |
| - name: Debug Installed Tools (macOS) | |
| if: matrix.config.os == 'macOS-latest' | |
| run: | | |
| echo "R version:" | |
| Rscript -e "R.version" | |
| echo "Checking pkg-config installation:" | |
| which pkg-config || echo 'pkg-config not found' | |
| pkg-config --version || echo 'pkg-config version issue' | |
| # Install Pandoc for Windows | |
| - name: Install Pandoc for Windows | |
| if: matrix.config.os == 'windows-latest' | |
| run: | | |
| choco install pandoc -y | |
| # Install R dependencies | |
| - name: Install R dependencies | |
| run: | | |
| Rscript -e "if (!requireNamespace('remotes', quietly = TRUE)) install.packages('remotes')" | |
| Rscript -e "remotes::install_deps(dependencies = TRUE)" | |
| # Run R tests | |
| - name: Run R tests | |
| run: | | |
| Rscript -e "testthat::test_file('tests/testthat/test-counts.R')" | |
| Rscript -e "testthat::test_file('tests/testthat/test-reordering.R')" | |
| # Build the package for Linux/macOS | |
| - name: Build the package (Linux/macOS) | |
| if: matrix.config.os != 'windows-latest' | |
| run: | | |
| R CMD build . | |
| # Build the package for Windows | |
| - name: Build the package (Windows) | |
| if: matrix.config.os == 'windows-latest' | |
| shell: cmd | |
| run: | | |
| R CMD build . | |
| # Check the package for Linux/macOS | |
| - name: Check the package (Linux/macOS) | |
| if: matrix.config.os != 'windows-latest' | |
| run: | | |
| echo "Running R CMD build" | |
| R CMD build . | |
| echo "Running R CMD check" | |
| PKG_TAR=$(ls *.tar.gz) | |
| R CMD check "$PKG_TAR" --no-manual --as-cran | |
| # Debug Build Output for Windows | |
| - name: Debug Build Output (Windows) | |
| if: matrix.config.os == 'windows-latest' | |
| shell: cmd | |
| run: | | |
| dir /b *.tar.gz || echo "No .tar.gz file found after build" | |
| # Check the package for Windows | |
| - name: Check the package (Windows) | |
| if: matrix.config.os == 'windows-latest' | |
| shell: cmd | |
| run: | | |
| dir /b *.tar.gz > tarball.txt | |
| set /p PKG_TAR=<tarball.txt | |
| echo Checking package %PKG_TAR% | |
| R CMD check %PKG_TAR% --no-manual --as-cran |