missed umap for rmDoublets

wbaopaul · May 25, 2021 · f92af2b · f92af2b
1 parent d80c3d4
commit f92af2b
Showing 1 changed file with 3 additions and 0 deletions.
diff --git a/scripts/src/rmDoublets.R b/scripts/src/rmDoublets.R
@@ -20,6 +20,9 @@ if(any(class(input.obj) == 'Seurat')) {
                                reg.var = 'nCount_ATAC') 
    seurat.obj = FindNeighbors(seurat.obj, reduction = 'pca', dims = 1:30, k.param = 20)    
    seurat.obj = FindClusters(seurat.obj, resolusion = 0.6)    
+   seurat.obj = RunTSNE(seurat.obj, dims = 1:30, reduction = 'pca', check_duplicates = FALSE)
+   seurat.obj = RunUMAP(seurat.obj, dims = 1:30, reduction = 'pca', verbose = F)
+
 }
 
 seurat.obj = FindDoublets_Atac(seurat.obj, PCs = 1:10, exp_rate = drate,