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  1. TranscriptID_GeneName_Extract TranscriptID_GeneName_Extract Public

    Pulls the transcript ID and gene names from multi-fasta file headers. The outputs are used by a separate script to organize data into gene named directories containing all associated transcripts

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    Pulling data from the ScanFold-Scan log.out file for all 241 windows that contain an SNP.

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  3. ScanFold_Convert_To_Genome_Coords ScanFold_Convert_To_Genome_Coords Public

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  4. siRNA_Scoring siRNA_Scoring Public

    This script parses through multiple ScanFold input and output files to generate per nucleotide and average data for a 19nt tiled window

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  5. ScanFold_Oligo_Metric ScanFold_Oligo_Metric Public

    Python script to parse through ScanFold output data in tiled 18nt windows to determine metrics associated with potential ASOs.

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  6. IGV-ScanFold IGV-ScanFold Public

    Forked from ResearchIT/IGV-ScanFold

    IGV + RNA folding tools

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